Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K12
         (1103 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571...    35   0.100
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235...    35   0.100
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265...    35   0.100
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704...    34   0.23 
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653...    29   8.7  

>08_02_1573 +
           27956351-27956409,27956411-27956630,27957000-27957150,
           27957602-27957807,27957967-27958020
          Length = 229

 Score = 35.1 bits (77), Expect = 0.100
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 251 KKDKXXSGTVXLKYIPRPKMQXXHSXETSRXCDEAKXLXVPCMDAXGXQK 400
           +KDK  SG+V L +IPRPKM+     + ++  +EA+ + +  MD    +K
Sbjct: 61  QKDKRFSGSVKLPHIPRPKMKVCMLGD-AQHVEEAEKIGLDYMDVEALKK 109


>08_02_1568 +
           27922338-27922342,27922839-27923058,27923369-27923519,
           27923874-27924079,27924211-27924264
          Length = 211

 Score = 35.1 bits (77), Expect = 0.100
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 251 KKDKXXSGTVXLKYIPRPKMQXXHSXETSRXCDEAKXLXVPCMDAXGXQK 400
           +KDK  SG+V L +IPRPKM+     + ++  +EA+ + +  MD    +K
Sbjct: 43  QKDKRFSGSVKLPHIPRPKMKVCMLGD-AQHVEEAEKIGLDYMDVEALKK 91


>01_06_1419 +
           37225007-37225011,37225633-37225852,37226347-37226516,
           37226615-37226676,37227002-37227207,37227581-37227634
          Length = 238

 Score = 35.1 bits (77), Expect = 0.100
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 251 KKDKXXSGTVXLKYIPRPKMQXXHSXETSRXCDEAKXLXVPCMDAXGXQK 400
           +KDK  SG+V L +IPRPKM+     + ++  +EA+ + +  MD    +K
Sbjct: 43  QKDKRFSGSVKLPHIPRPKMKVCMLGD-AQHVEEAEKMGLDYMDVEALKK 91


>02_02_0678 +
           12868735-12868739,12869576-12869795,12870280-12870430,
           12870853-12871058,12871166-12871219
          Length = 211

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 251 KKDKXXSGTVXLKYIPRPKMQXXHSXETSRXCDEAKXLXVPCMDAXGXQK 400
           +KDK  SG+V L +IPRPK++     + ++  +EA+ + +  MD    +K
Sbjct: 43  QKDKRFSGSVKLPHIPRPKLKVCMLGD-AQHVEEAEKMGLDYMDVEALKK 91


>03_02_0221 +
           6533643-6533687,6533860-6533955,6535323-6535682,
           6537106-6537177,6537374-6537697
          Length = 298

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 311 AFSAAVCIXXLQCRRXXCPSC 249
           A  A VCI  L+CR+  CP C
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRC 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,551
Number of Sequences: 37544
Number of extensions: 105812
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3316323664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)