Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K10
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    31   0.82 
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 198 SVARPVQRPSDVAGRRRPSHRAHATPSHMLGRSRCTRVXWHSPAALP 58
           SV   VQ  + ++G+  P  + HATPSH + R + +R   +S   +P
Sbjct: 181 SVTSSVQSVAALSGQN-PRQQVHATPSHQIPRHQSSRTHQNSRQQVP 226


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 76  VPGYPRATRPPQHVAWGRVGPVRRPAASSDVARPLDWPRY*RDSPRR 216
           VP  PR  +  +H + G  G  R+       +RP+D PRY  D+P R
Sbjct: 688 VPEAPRPRQGYEHSS-GYGGDDRKEQPKYMESRPVDEPRYETDAPSR 733


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,107,223
Number of Sequences: 27780
Number of extensions: 293415
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)