Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_K09
(977 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.009
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.020
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.035
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.43
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 5.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.009
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Frame = +1
Query: 769 KXPPPPXXXLFFIXXXPPPXXTPPP--------PXXPPP*XXXAPPPPP 891
K PPPP + P P PPP P PPP A PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +1
Query: 778 PPPXXXLFFIXXXPPPXXTPPPPXXPPP*XXXAPPPPP 891
PPP I PPP PPPP PPPPP
Sbjct: 752 PPPAP----IMGGPPP--PPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +1
Query: 775 PPPPXXXLFFIXXXPPPXXTPPPPXXPPP*XXXAPPPPPXXKKK 906
PPPP PPP PPP AP P + K
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.7 bits (76), Expect = 0.020
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 817 PPPXXTPPPPXXPP-P*XXXAPPPPP 891
PPP PPPP PP P + PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 31.5 bits (68), Expect = 0.19
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 815 PPPPXXXPPPPXXPPXXXG 871
PPPP PPPP PP G
Sbjct: 1708 PPPPMSVPPPPSAPPMPAG 1726
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = +1
Query: 775 PPPPXXXLFFIXXXPPPXXTPP----PPXXPPP 861
PPPP + PPP PP PP PPP
Sbjct: 1707 PPPPPMSV------PPPPSAPPMPAGPPSAPPP 1733
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.9 bits (74), Expect = 0.035
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 817 PPPXXTPPPPXXPPP*XXXAPPPPPXXKKK 906
PPP PPPP PP PPPP KK+
Sbjct: 9 PPPP--PPPPGFEPPSQPPPPPPPGYVKKR 36
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 820 PPXXTPPPPXXPPP*XXXAPPPP 888
PP PP P PPP APP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIP 161
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +1
Query: 775 PPPPXXXLFFIXXXPP-PXXTPPPPXXPPP*XXXAPPPP 888
PP P L PP P PP P PP APP P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -3
Query: 891 GGGGGGXPXLXGGXXG-GGGXXXGGGGXXNKK*XPXXGGG 775
GG GGG GG G GGG GGG P GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 903 FFXXGGGGGGXPXLXGGXXGGGGXXXGGGG 814
F GGG GG P GG G GG GG G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGG--FGGEG 217
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -1
Query: 974 GXXXXGXGGXXXFFYXXEXXXXXFFFXXGGGGGAXXXXGGGXXGGGGVXXGGG 816
G G GG E F GG GG GGG G GG G G
Sbjct: 217 GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = -1
Query: 890 GGGGGAXXXXGG-GXXGGGGVXXGGGXXXIKNKXXXGGGG 774
G GGG GG G GGG GGG GGG
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 775 PPPPXXXLFFIXXXPPPXXTPPPPXXPPP*XXXAPPPPP 891
PPPP PP + PPP P PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 820 PPXXTPP--PPXXPPP*XXXAPPPPP 891
PP TPP PP PP APP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = +1
Query: 823 PXXTPPPPXXPP-P*XXXAPPPPP 891
P TP PP P P PPPPP
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPP 748
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 888 GGGGGXPXLXGGXXGGGGXXXGGG 817
GG GG GG GG G GGG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGG 39
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 891 GGGGGGXPXLXGGXXGGGGXXXGGGG 814
GG GGG GG GG GG G
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRG 51
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -1
Query: 890 GGGGGAXXXXGGGXXGG-GGVXXGGGXXXIKNKXXXGGGGXF 768
G GG + GGG GG GG GG + G G F
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRGRF 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,159
Number of Sequences: 5004
Number of extensions: 23777
Number of successful extensions: 239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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