Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K07
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    33   0.40 
07_03_1036 - 23430643-23431311,23431441-23431668                       31   1.2  
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317...    29   5.0  
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    29   6.6  
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422...    28   8.7  
04_04_0947 - 29583775-29583931,29584030-29584256                       28   8.7  
01_01_0809 + 6294991-6295044,6295099-6296334                           28   8.7  

>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 348 NRKRNETDRAAGFGDESNGASGDGL*NHIQRREVSG-QYRRTTFFTG*NKC 497
           +R+RN  DR     + +NG S DGL + ++R +++G +  RTT  +    C
Sbjct: 148 SRQRNIEDRLRERDEAANGGSSDGLQDRMERSKIAGVRLNRTTTSSSSEPC 198


>07_03_1036 - 23430643-23431311,23431441-23431668
          Length = 298

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +2

Query: 545 SRISTGMCRDSS----SDDTRYHKGCLPDTVESKLSSDGVLTVTAPKVLALPSTG-EKIV 709
           + +   +CR++      D T Y KGC P    +  +S G+   ++ ++L+ PS+     V
Sbjct: 53  NEVLKALCREAGWVVEDDGTTYRKGCKPPPSSAGGASVGMSPCSSTQLLSAPSSSFPSPV 112

Query: 710 PXTHTGP 730
           P  H  P
Sbjct: 113 PSYHASP 119


>04_04_0939 -
           29530242-29531087,29531406-29531597,29531690-29531770,
           29532300-29532428,29532579-29532650,29532761-29532829,
           29533809-29533891,29534101-29534203,29534289-29534402,
           29536230-29536274
          Length = 577

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 127 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 219
           R N K C+ C  C    DH   W+ N   R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 257 MHRLVERRHPVEILRAEEFSIHQTKWSL-QIVHVWQN*HR 141
           +H+   +RH +E L ++  S HQ    + Q  H WQ  HR
Sbjct: 737 LHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHR 776


>12_02_0849 -
           23640091-23640279,23640537-23640677,23640756-23642203,
           23642300-23642372,23642452-23642572,23642689-23642791,
           23642979-23643052,23643140-23643285,23643368-23643476,
           23643580-23643704,23643989-23644342,23644440-23644503,
           23644581-23645032
          Length = 1132

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 678 STLGAVTVRTPSEDNFDSTVSGKQPL 601
           S LG VTV TP  D+ +S  +GK  L
Sbjct: 826 SLLGEVTVSTPKPDSIESIPTGKSDL 851


>04_04_0947 - 29583775-29583931,29584030-29584256
          Length = 127

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 285 EXETFCSGHDASIG*KATSCRNPAGRRVLDPSDE 184
           + E   SGH AS    A S R P GR   DP D+
Sbjct: 12  DIEAGFSGHSASPVKPAASPRRPGGRLFCDPCDD 45


>01_01_0809 + 6294991-6295044,6295099-6296334
          Length = 429

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 556 HGYVSRQFIRRYALPQGLFTRHGGIE 633
           +G V+++ I  + L  GLF RHGG++
Sbjct: 401 NGRVAQEMIEDWVLQAGLFGRHGGMK 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,242,407
Number of Sequences: 37544
Number of extensions: 390987
Number of successful extensions: 1017
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)