Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K04
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    29   3.7  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    29   3.7  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   3.7  

>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = -2

Query: 373 GPPKXXFXFXXXRGGFFXXPHNXPPX*KXGGEXXXPPXXXFXKKKXGNFXGXP 215
           GPP     F     G F  P   PP    GG+   PP         G   G P
Sbjct: 132 GPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPP 184


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = -2

Query: 373 GPPKXXFXFXXXRGGFFXXPHNXPPX*KXGGEXXXPPXXXFXKKKXGNFXGXP 215
           GPP     F     G F  P   PP    GG+   PP         G   G P
Sbjct: 412 GPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPP 464


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/83 (28%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
 Frame = -2

Query: 436 GPPXXKKXKXXFXPPPXXFXWGPPKXXFXFXXXR-GGFFXXPHNXPPX*KXGGEXXXPPX 260
           GPP          PPP  F   PP+  F        G    P   PP    G     PP 
Sbjct: 277 GPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFG---MGPPR 333

Query: 259 XXFXKKKXGNFXGXPXXXFFXPP 191
                     F G P   FF PP
Sbjct: 334 GFMPPPHPMMFRGGPYPPFFPPP 356


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/83 (28%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
 Frame = -2

Query: 436 GPPXXKKXKXXFXPPPXXFXWGPPKXXFXFXXXR-GGFFXXPHNXPPX*KXGGEXXXPPX 260
           GPP          PPP  F   PP+  F        G    P   PP    G     PP 
Sbjct: 277 GPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFG---MGPPR 333

Query: 259 XXFXKKKXGNFXGXPXXXFFXPP 191
                     F G P   FF PP
Sbjct: 334 GFMPPPHPMMFRGGPYPPFFPPP 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,625
Number of Sequences: 27780
Number of extensions: 165237
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)