Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K01
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   124   1e-29
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    87   4e-18
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    86   7e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    62   1e-10
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   3.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  124 bits (300), Expect = 1e-29
 Identities = 54/76 (71%), Positives = 62/76 (81%)
 Frame = +3

Query: 444 GXYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSV 623
           G YVPRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WA GHYTEGAEL D+V
Sbjct: 57  GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116

Query: 624 LXVVRKXXXXCDCLXG 671
           L VVR+    CD L G
Sbjct: 117 LDVVRREAEACDALQG 132



 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 34/54 (62%), Positives = 42/54 (77%)
 Frame = +2

Query: 278 REIVHIQAGQCGNHIGSXFWEIISDEHGIXPTGAYHGDSDLQLXRINVYYNEAS 439
           REIVHIQAGQCGN +G+ FW  I+DEHG+   G YHG S+ Q  R+NVY+NEA+
Sbjct: 2   REIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA 55


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 37/76 (48%), Positives = 50/76 (65%)
 Frame = +3

Query: 444 GXYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSV 623
           G +VPR+I VDLEP  +D VR+GP+  +F P+  V G+  A NN+A GHYT G E++DSV
Sbjct: 63  GKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSV 122

Query: 624 LXVVRKXXXXCDCLXG 671
           L  +R+    C  L G
Sbjct: 123 LERIRRMADNCSGLQG 138



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 278 REIVHIQAGQCGNHIGSXFWEIISDEHGIXPTGAYHGDSDLQLXRINVYYNE 433
           RE++ +  GQ G  IG+  WE+   EHGI P G    +S++   + N Y N+
Sbjct: 2   REVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVH--KNNSYLND 51


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 37/76 (48%), Positives = 48/76 (63%)
 Frame = +3

Query: 444 GXYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSV 623
           G YVPR+I VDLEP  +D VR+GP+  +F P+  + G+  A NN+A GHYT G ELVD V
Sbjct: 59  GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEV 118

Query: 624 LXVVRKXXXXCDCLXG 671
              +R+    C  L G
Sbjct: 119 TDKIRRIADNCSGLQG 134



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +2

Query: 278 REIVHIQAGQCGNHIGSXFWEIISDEHGIXPTG 376
           REI+ I  GQ G  IG+  WE+   EHGI P G
Sbjct: 2   REIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
 Frame = +3

Query: 450 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAXGHYTEGAELVDSV 623
           Y+PRAIL+DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + +
Sbjct: 60  YIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDI 118

Query: 624 LXVVRKXXXXCDCLXG 671
           + ++ +     D L G
Sbjct: 119 MDMIDREADGSDSLEG 134



 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +2

Query: 278 REIVHIQAGQCGNHIGSXFWEIISDEHGIXPTGAYHGDSDLQLXRINVYYNEA 436
           REI+ +QAGQCGN IGS FW+ +  EHGI P G     +   + R +V++ ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 510 GPFGQIFRPDNFVFGQSGAG-NNWAXGHYTEGAEL 611
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,282
Number of Sequences: 5004
Number of extensions: 32152
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)