Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J24
         (953 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174...    32   0.59 
07_03_1136 + 24218601-24218734,24218769-24219906                       31   1.8  
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     30   2.4  
01_05_0513 - 22864657-22867899                                         29   5.5  

>09_01_0112 +
           1737438-1737777,1738441-1738511,1738974-1739052,
           1741559-1741641,1741733-1741784,1742038-1742105,
           1742279-1742345,1742426-1742505,1742576-1742640,
           1742785-1742847,1743271-1743427,1743511-1743588,
           1743677-1744219,1744321-1744497,1744534-1744788,
           1745270-1745329,1745874-1745888,1746123-1746135,
           1746819-1746934
          Length = 793

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +2

Query: 443 GXGGGGGFPXH*XXAXGXXGXXSGIGPXXGGXRLSPESG 559
           G GGG G P H     G  G   G G   GG R  P  G
Sbjct: 38  GGGGGSGSPPHRFSRGGGGGGGDGGGGGGGGGRFHPYRG 76


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 431 ERXXGXGGGGGFPXH*XXAXGXXGXXSGIGPXXGGXRLSPESGDNXG 571
           +R  G GGGGG         G  G   G G   GG   +PE G + G
Sbjct: 273 DRNKGGGGGGGGALENAREDGAEGGGGGGGGGGGGGHGAPELGFSGG 319


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 22/64 (34%), Positives = 23/64 (35%)
 Frame = +2

Query: 380 GRXGXARXGXRNXPTPXERXXGXGGGGGFPXH*XXAXGXXGXXSGIGPXXGGXRLSPESG 559
           GR      G R       R  G GGGGG   +     G  G  SG G   GG     ESG
Sbjct: 45  GRGPPGGGGGRGYEPGGGRGYGGGGGGGGRGY-GGGGGGGGYESGGGRGYGGGGRGYESG 103

Query: 560 DNXG 571
              G
Sbjct: 104 GGRG 107


>01_05_0513 - 22864657-22867899
          Length = 1080

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = -1

Query: 554 IRGITGXXLXXARXRSXPPXGRXXRXSGXGNXRPPXXPPXSP 429
           IRG  G  +        PP  R     G  N  PP  PP +P
Sbjct: 149 IRGEVGLKIYYYDEAPPPPEDRPPEGGGGDNAPPPEVPPEAP 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,299
Number of Sequences: 37544
Number of extensions: 212831
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)