Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J22
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.5  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.8  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   7.7  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.7  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 395 PSTRLSKSPMPTLHP-TKKKSMQPRPYCRMTR*PWKTSMMPILTW--PLIPSRSQPSGH- 562
           P +    SP P L P ++  S++ +     ++       +PI T   PLIPS SQ S H 
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 563 TLRKSS 580
           T+R  S
Sbjct: 102 TIRHES 107


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 415 ESNANIASYQKEINATKALLPYDQMTMEDFYDAH----PDLALDPIKKPTFWPHTPEEQL 582
           E +A I  ++        + PYD + +ED +++     P++ LDP     F  + PEE  
Sbjct: 661 EDSAIIGPWKSGTTLRNLIYPYDTIELEDSWNSSWGCIPNIELDPY---AFKLYVPEEDF 717

Query: 583 DYVDP 597
              DP
Sbjct: 718 IENDP 722


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 491 PWKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSL 616
           P  T+  P+ + PL+   S P  +  + S S + +QRN L L
Sbjct: 47  PRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFL 88


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 166 QKAHLAAFKIKSDNYLRRVLANPPEPPKIN 255
           Q +  + FK  S++YL + ++  PE P++N
Sbjct: 72  QSSTESLFKADSEDYLCKKVSKGPESPRVN 101


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 182 LLSK*NPIIISEGY*PIHLNRPRLTGLCTNRLYLFL 289
           LL   NPI  S      HLN+  +T LC N    FL
Sbjct: 259 LLVNLNPIYFSTARRFEHLNKSLITTLCLNNYLSFL 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,259
Number of Sequences: 5004
Number of extensions: 63972
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)