Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J22
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    30   1.8  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    29   4.2  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    29   4.2  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   4.2  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   4.2  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U23526-5|AAB36850.1|  391|Caenorhabditis elegans Acyltransferase...    28   9.6  

>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
 Frame = +1

Query: 103 AXXXSQSAVNWAALAEXVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVP 282
           A   + S+VNW+ LAE +  E  A L   K  S  +   V   P + PKI++A  K+A+P
Sbjct: 5   AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64

Query: 283 I-PGMVDTFQKQYEALKIPYPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEIN 456
               ++D+ QKQYE++KIPY       L E  QW    NA     +   A+     K++ 
Sbjct: 65  AHSAVLDSLQKQYESVKIPYGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVE 124

Query: 457 ATKALLP----YDQMTMEDFYDAH 516
              A  P    +D+    +++ AH
Sbjct: 125 EKWAKAPPVEHFDRQHFVEYFPAH 148


>AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical
           protein Y18D10A.8 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 494 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQL-HTNIVK-SVAGYI 667
           W   +MP+   P +P    P  H +     +++ + N L    LQL H  I++ S +G I
Sbjct: 198 WMNPLMPMPPNPFLPHSMIPPDHQMFLRQRSLNKKPNNLMNKTLQLRHEMIIRNSDSGKI 257

Query: 668 LVIAIRHVISFENL 709
           + +  R V + E L
Sbjct: 258 MGVKGRRVAAVEQL 271


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/77 (22%), Positives = 36/77 (46%)
 Frame = +1

Query: 115 SQSAVNWAALAEXVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGM 294
           +++   W A +   P    + +  ++  SD  LR V +NP +   I+W    +   +   
Sbjct: 299 TENTTGWRAFSSTSPNPTSSRV--WQYLSDTPLRVVTSNPTDLENISWTELNEQPYV--N 354

Query: 295 VDTFQKQYEALKIPYPA 345
           +D  +  Y+ +++P PA
Sbjct: 355 LDRLKTIYDVVEVPQPA 371


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 163 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 300
           E K+   A+  ++D +  R  ANP  PPK+  A  K+  P+P   D
Sbjct: 170 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 213


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 163 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 300
           E K+   A+  ++D +  R  ANP  PPK+  A  K+  P+P   D
Sbjct: 367 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 410


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 594
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 594
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/85 (20%), Positives = 39/85 (45%)
 Frame = +1

Query: 271 QAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKE 450
           Q +  PG+   F+       +P     Q  +V    NQ+K  I+A +  S++  +   + 
Sbjct: 375 QIIDRPGIRSLFKFVLPEYHMPSGDVFQATIVPQLLNQMKQQIEALVHNSSSLSSIPDQV 434

Query: 451 INATKALLPYDQMTMEDFYDAHPDL 525
           + ++ A   Y+ +++ +   A P++
Sbjct: 435 MTSSSATSSYEDVSVNESQMAGPNV 459


>AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical
           protein C44E4.1b protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 515 ILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLHT---NIVKSVAG 661
           +L W  I S + PSG T  ++ S + T+++++ L+  QL T   NI+ S  G
Sbjct: 308 VLKWEQIDSGAPPSGATDHQNRSRI-TKKDQIMLMTEQLATITSNIISSAHG 358


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 515  ILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLHT---NIVKSVAG 661
            +L W  I S + PSG T  ++ S + T+++++ L+  QL T   NI+ S  G
Sbjct: 2206 VLKWEQIDSGAPPSGATDHQNRSRI-TKKDQIMLMTEQLATITSNIISSAHG 2256


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 515  ILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLHT---NIVKSVAG 661
            +L W  I S + PSG T  ++ S + T+++++ L+  QL T   NI+ S  G
Sbjct: 2204 VLKWEQIDSGAPPSGATDHQNRSRI-TKKDQIMLMTEQLATITSNIISSAHG 2254


>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
 Frame = +1

Query: 460 TKALLPYDQMTMEDFYDAHPDLALDPIK-KPTFWPHTPEEQLDYVDPEKXXXXXXXXXXH 636
           T  L  YD +  E F+D HP +    +    T   H P   LD   P             
Sbjct: 35  TTNLANYDPVLNEYFFDRHPGVFAQILNYYRTGKLHYP---LDVCGPLFEEELKYWGLDS 91

Query: 637 *YCKKCCWLYISDSHQT 687
             C+ CCW+ +S +  T
Sbjct: 92  NECEPCCWMTLSGTRDT 108


>U23526-5|AAB36850.1|  391|Caenorhabditis elegans
           Acyltransferase-like protein 12 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 358 ALVESQWNQVKNAIDAFIQESNANIASYQKE 450
           A+V + WN V   + A + E   N+A Y +E
Sbjct: 86  AMVNAHWNAVSVFVGATVTEYGTNLAGYAEE 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,706
Number of Sequences: 27780
Number of extensions: 370340
Number of successful extensions: 1019
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)