Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J21
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.30
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.70
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.93
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.17
Identities = 33/142 (23%), Positives = 43/142 (30%), Gaps = 10/142 (7%)
Frame = +2
Query: 419 PPXP-----GEXGXGXGAXSRXPXXXPXGXGXXXXGXVXPPPXGGXXVPPNXGXXPXKTX 583
PP P G+ G G+ + P G + PP G PP P ++
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP----PPPRSA 369
Query: 584 XPXGXQRPP--NPKXXPXXPFXQRARXXXXXXXXXXXFXXXQTPPXPXXKPXGXPPXNPP 757
G Q PP + + P A +T P P PP PP
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Query: 758 GXP---PPXXXLPXXXGXPSPP 814
P PP + P PP
Sbjct: 430 SLPPSAPPSLPMGAPAAPPLPP 451
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/70 (28%), Positives = 24/70 (34%)
Frame = +1
Query: 712 PPXKXTXGXSPRKPPRXAPXXPXPSXXXGXPLPAFXPXXXPVGXLPLXPPGXVSXSFYVX 891
PP P PP P P PS G P P P+ PL P + + +
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAP-PSLPMGAPAAPPLPPSAPIAP-PL--PAGMPAAPPLP 470
Query: 892 XXLXXPPPPP 921
PPP P
Sbjct: 471 PAAPAPPPAP 480
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 705 PXPXP*XNPXGFPPXTPPXGPXLSXXFPXXXXSPPRLXSXXXTRGXPPPXPP 860
P P P PP PP P + P S P PP PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 740 PPXNPPGXPPPXXXLPXXXGXPSPP 814
PP NPP PPP P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 29.9 bits (64), Expect = 0.53
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 707 PPXPXXKPXGXPPXNPPGXPPP 772
PP P P PP PP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.70
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 813 GGEGXPXXXGRXXXG-GGXPGGFXGGXPXGXFXGXGG 706
G EG P G G GG GGF GG P G G GG
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGG-PGGFGGGPGG 267
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 810 GEGXPXXXGRXXXGGGXPGGFXGGXPXGXFXGXGG 706
G G G GG PGGF GG G F G G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGG--LGGFGGGPG 259
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.93
Identities = 20/88 (22%), Positives = 25/88 (28%)
Frame = +2
Query: 524 PPXGGXXVPPNXGXXPXKTXXPXGXQRPPNPKXXPXXPFXQRARXXXXXXXXXXXFXXXQ 703
PP P P + P PP+P P P + +
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP-SKAPPIPSSLPPPAQPAAPVK 182
Query: 704 TPPXPXXKPXGXPPXNPPGXPPPXXXLP 787
+PP P PP P PPP P
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/78 (25%), Positives = 25/78 (32%)
Frame = +1
Query: 688 ISXXXNPXPPXKXTXGXSPRKPPRXAPXXPXPSXXXGXPLPAFXPXXXPVGXLPLXPPGX 867
IS +P P +K +P P P+ P PA P P + PP
Sbjct: 706 ISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Query: 868 VSXSFYVXXXLXXPPPPP 921
PPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +1
Query: 682 PXISXXXNPXPPXKXTXGXSPRKPPRXAPXXPXPSXXXGXPLPAFXPXXXPV 837
P + P K + G P PP AP P PS P+P PV
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL-PPVPVPTAKAPPV 1239
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 682 PXISXXXNPXPPX-KXTXGXSPRKPPRXAPXXPXPSXXXGXPLP---AFXPXXXPVGXLP 849
P + + PP K G P PP AP P PS P+P P P LP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTAPPVPTPSAGLP 1227
Query: 850 LXP 858
P
Sbjct: 1228 PVP 1230
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +1
Query: 712 PPXKXTXGXSP-RKPPRXAPXXPXPSXXXGXPLP--AFXPXXXPVGXLPLXP 858
PP G P KP AP P PS P P A P P +P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 740 PPXNPPGXPPPXXXLPXXXGXPSPP 814
PP P PPP P G PS P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 707 PPXPXXKPXGXPPXNPPGXPPPXXXLPXXXGXPSP 811
PP P P P PP PPP P+P
Sbjct: 1715 PPPPSAPPM---PAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -2
Query: 863 PGGXRGRXPT-GXXXGXKAGRGXPXXXEGSGXXGAXRGGXRG 741
PG GR + G G GRG G G G RGG RG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRG-GARGGGRGGARG 45
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -1
Query: 813 GGEGXPXXXGRXXXGGGXPGGFXGGXPXGXFXGXGG 706
G G R GGG GGF GG G G G
Sbjct: 149 GSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,321
Number of Sequences: 5004
Number of extensions: 25888
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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