Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J20
         (907 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06347-1|CAA29653.1|  282|Homo sapiens protein ( Human mRNA for ...    31   7.6  
M60784-1|AAA61245.1|  282|Homo sapiens U1 snRNP-specific protein...    31   7.6  
BC008290-1|AAH08290.1|  282|Homo sapiens small nuclear ribonucle...    31   7.6  
BC000405-1|AAH00405.1|  282|Homo sapiens small nuclear ribonucle...    31   7.6  

>X06347-1|CAA29653.1|  282|Homo sapiens protein ( Human mRNA for U1
           small nuclear RNP-specific A protein. ).
          Length = 282

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 619 TQEKTFXQKAXKRPXTXKRPGLVXFFXKAPPPLTXLXKXDXQXKG---WXNPPGXLXXPG 789
           +QE    +KA +        G V       PP+T   +      G   +  PPG +  PG
Sbjct: 115 SQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPG 174

Query: 790 VFPXEXPPCALP 825
           + P + PP A+P
Sbjct: 175 LAPGQIPPGAMP 186


>M60784-1|AAA61245.1|  282|Homo sapiens U1 snRNP-specific protein A
           protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 619 TQEKTFXQKAXKRPXTXKRPGLVXFFXKAPPPLTXLXKXDXQXKG---WXNPPGXLXXPG 789
           +QE    +KA +        G V       PP+T   +      G   +  PPG +  PG
Sbjct: 115 SQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPG 174

Query: 790 VFPXEXPPCALP 825
           + P + PP A+P
Sbjct: 175 LAPGQIPPGAMP 186


>BC008290-1|AAH08290.1|  282|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 619 TQEKTFXQKAXKRPXTXKRPGLVXFFXKAPPPLTXLXKXDXQXKG---WXNPPGXLXXPG 789
           +QE    +KA +        G V       PP+T   +      G   +  PPG +  PG
Sbjct: 115 SQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPG 174

Query: 790 VFPXEXPPCALP 825
           + P + PP A+P
Sbjct: 175 LAPGQIPPGAMP 186


>BC000405-1|AAH00405.1|  282|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 619 TQEKTFXQKAXKRPXTXKRPGLVXFFXKAPPPLTXLXKXDXQXKG---WXNPPGXLXXPG 789
           +QE    +KA +        G V       PP+T   +      G   +  PPG +  PG
Sbjct: 115 SQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPG 174

Query: 790 VFPXEXPPCALP 825
           + P + PP A+P
Sbjct: 175 LAPGQIPPGAMP 186


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,827,279
Number of Sequences: 237096
Number of extensions: 882383
Number of successful extensions: 1926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)