Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J18
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical pr... 29 4.4
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 29 4.4
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 29 4.4
AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein. 29 4.4
AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein. 29 4.4
AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte ... 29 4.4
AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte ... 29 4.4
AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte ... 29 4.4
AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte ... 29 4.4
AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin s... 29 4.4
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 29 4.4
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 408 AILKRNLGKCFTLLTGFNVLSELSSSQLMSDETIHLVLPLR 286
A +++ GK +L G + ++S L+ D T+H+++PLR
Sbjct: 451 AYVQQTFGKLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLR 491
>Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical
protein T24D1.1a protein.
Length = 608
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 408 AILKRNLGKCFTLLTGFNVLSELSSSQLMSDETIHLVLPLR 286
A +++ GK +L G + ++S L+ D T+H+++PLR
Sbjct: 325 AYVQQTFGKLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLR 365
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 408 AILKRNLGKCFTLLTGFNVLSELSSSQLMSDETIHLVLPLR 286
A +++ GK +L G + ++S L+ D T+H+++PLR
Sbjct: 451 AYVQQTFGKLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLR 491
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 408 AILKRNLGKCFTLLTGFNVLSELSSSQLMSDETIHLVLPLR 286
A +++ GK +L G + ++S L+ D T+H+++PLR
Sbjct: 453 AYVQQTFGKLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLR 493
>AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein.
Length = 668
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 50 RYFGTVYLIIY---FIYHDLALFIMIILAIQSIV 142
+ FGTVY+ ++ FIY L+LFI II+ +V
Sbjct: 523 KVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVV 556
>AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein.
Length = 611
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 50 RYFGTVYLIIY---FIYHDLALFIMIILAIQSIV 142
+ FGTVY+ ++ FIY L+LFI II+ +V
Sbjct: 523 KVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVV 556
>AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform b protein.
Length = 644
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 50 RYFGTVYLIIY---FIYHDLALFIMIILAIQSIV 142
+ FGTVY+ ++ FIY L+LFI II+ +V
Sbjct: 529 KVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVV 562
>AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform a protein.
Length = 611
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 50 RYFGTVYLIIY---FIYHDLALFIMIILAIQSIV 142
+ FGTVY+ ++ FIY L+LFI II+ +V
Sbjct: 523 KVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVV 556
>AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform d protein.
Length = 668
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 50 RYFGTVYLIIY---FIYHDLALFIMIILAIQSIV 142
+ FGTVY+ ++ FIY L+LFI II+ +V
Sbjct: 523 KVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVV 556
>AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform c protein.
Length = 619
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 50 RYFGTVYLIIY---FIYHDLALFIMIILAIQSIV 142
+ FGTVY+ ++ FIY L+LFI II+ +V
Sbjct: 531 KVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVV 564
>AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin
synthase-S protein.
Length = 715
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 408 AILKRNLGKCFTLLTGFNVLSELSSSQLMSDETIHLVLPLR 286
A +++ GK +L G + ++S L+ D T+H+++PLR
Sbjct: 432 AYVQQTFGKLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLR 472
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 408 AILKRNLGKCFTLLTGFNVLSELSSSQLMSDETIHLVLPLR 286
A +++ GK +L G + ++S L+ D T+H+++PLR
Sbjct: 443 AYVQQTFGKLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLR 483
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 66 YTLLFILYIMIWHYSS*LFWQYSLS*VQLYKFLEIQTN*SLSTF 197
+T F+ YI H SS +++ +SL + Y FLE QTN + + F
Sbjct: 3 FTATFLTYIS--HVSS-IYYNHSLYVPKYYDFLETQTNLTKNLF 43
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 469 YSTSFTPFP-FRKP*FITATSVVCFRKMWQNHPNYLLNFG 585
YST F P FRK I +TS +CF +Q ++ +FG
Sbjct: 216 YSTPFVVGPRFRKREVIDSTSTICFLTFFQFIFMFIYSFG 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,414
Number of Sequences: 27780
Number of extensions: 323955
Number of successful extensions: 798
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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