Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J17
(1122 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 1.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 6.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 6.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 6.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 6.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 6.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 6.3
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 23 8.0
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 26 8.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 1.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 717 PPPPPPP 697
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 1.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 714 PPPPPPP 694
PPPPPPP
Sbjct: 337 PPPPPPP 343
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 23.0 bits (47), Expect(2) = 8.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 717 PPPPPPPP 694
PPPPPP P
Sbjct: 240 PPPPPPRP 247
Score = 21.4 bits (43), Expect(2) = 8.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -1
Query: 732 FXXXXPPPPPPP 697
F PPPPPP
Sbjct: 234 FSSSSTPPPPPP 245
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 289 GXPLFXKNKKFXPXFFGXF 233
G LF KNKK P FF F
Sbjct: 147 GKSLFRKNKKLPPNFFDYF 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,613
Number of Sequences: 5004
Number of extensions: 20985
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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