Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J17
         (1122 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL138691-1|CAH72340.1|  391|Homo sapiens SRY (sex determining re...    26   5.8  
Y13436-1|CAA73847.1|  387|Homo sapiens Sry-related Box 1 protein...    26   5.8  

>AL138691-1|CAH72340.1|  391|Homo sapiens SRY (sex determining
           region Y)-box 1 protein.
          Length = 391

 Score = 26.2 bits (55), Expect(2) = 5.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 695 GGGGGGGGXKXXKKKKK 745
           GGGGGGGG K  + + K
Sbjct: 36  GGGGGGGGAKANQDRVK 52



 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 674 PXXXXXXGGGGGGGG 718
           P      GGGGGGGG
Sbjct: 25  PAGAGGGGGGGGGGG 39


>Y13436-1|CAA73847.1|  387|Homo sapiens Sry-related Box 1 protein
           protein.
          Length = 387

 Score = 26.2 bits (55), Expect(2) = 5.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 695 GGGGGGGGXKXXKKKKK 745
           GGGGGGGG K  + + K
Sbjct: 36  GGGGGGGGAKANQDRVK 52



 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 674 PXXXXXXGGGGGGGG 718
           P      GGGGGGGG
Sbjct: 25  PAGAGGGGGGGGGGG 39


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,923,419
Number of Sequences: 237096
Number of extensions: 1937793
Number of successful extensions: 40102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16369
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 15589897932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)