Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J16
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    26   6.0  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -2

Query: 286 LCIRRISL---IPPHNVTLLFYEIPIYL*ESTRIFAQKLTRHYNVNRFSFSIRVFFRYCS 116
           L +R +++   IPP     L Y IP++         Q L  + N+ R S       R CS
Sbjct: 393 LVVRNVAIELNIPPEKALQLRYSIPVF---------QNLEHNINIGRCSLKKLSTIRSCS 443

Query: 115 LYLFAFLS 92
              +AF S
Sbjct: 444 TNSYAFTS 451


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 313 LCLYSNSPDLRTRSRLLPKINFEKLKKIY 399
           +CLY N P    R+R L  + F++ K ++
Sbjct: 47  VCLYMNMPKKEVRTRCLIDVAFKEGKNVF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,020
Number of Sequences: 5004
Number of extensions: 39673
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)