Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J15
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    83   4e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    82   9e-17
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    78   1e-15
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    27   3.6  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   4.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   8.4  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 34/61 (55%), Positives = 53/61 (86%)
 Frame = +1

Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 333
           L  +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68

Query: 334 G 336
           G
Sbjct: 69  G 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 82.2 bits (194), Expect = 9e-17
 Identities = 35/61 (57%), Positives = 53/61 (86%)
 Frame = +1

Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 333
           L  +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EKLS++P  
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 334 G 336
           G
Sbjct: 69  G 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 32/61 (52%), Positives = 53/61 (86%)
 Frame = +1

Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 333
           L  +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68

Query: 334 G 336
           G
Sbjct: 69  G 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -2

Query: 266 SSVITFLSFSASASIPTELRIFSTSAAAGVGLPPST 159
           SSV T LS SAS+SIP      S+SAAA   L  S+
Sbjct: 8   SSVDTSLSSSASSSIPAS----SSSAAASTSLSSSS 39


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 13  YASL*GILKTLFFLTC*RLFKPXVILSALHVSCQLGLKKCVTWPRIYLAVL 165
           Y S   + K LF +    LF    + + L ++ +LG+++ V WP +++ VL
Sbjct: 99  YGSKWPLRKALFVVISFMLFSGG-LQAMLILTIKLGIRRHVEWPVVFMGVL 148


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 314 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVGLPPSTA 156
           SF  P+A +   S P+SS+ +F + SA+++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 196  VEKILSSVGIEADAEKLKKVITELNG 273
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 296 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVGLPPSTA 156
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTS 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,081
Number of Sequences: 5004
Number of extensions: 25310
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)