Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J15
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 79 4e-15
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 71 1e-12
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 66 3e-11
07_01_1001 - 8460467-8460799 50 2e-06
07_03_0321 + 16757414-16757743 48 8e-06
01_06_0098 - 26416768-26416998 35 0.10
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 29 3.8
12_01_0090 + 717524-719080 29 6.7
06_03_0854 + 25400855-25403741,25406174-25407708 29 6.7
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 8.8
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 79.4 bits (187), Expect = 4e-15
Identities = 35/62 (56%), Positives = 51/62 (82%)
Frame = +1
Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 333
LAVLGG +P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P G
Sbjct: 9 LAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSG 68
Query: 334 GG 339
GG
Sbjct: 69 GG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 70.9 bits (166), Expect = 1e-12
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +1
Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 333
LA L G P P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GREK +S+P G
Sbjct: 202 LATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCG 261
Query: 334 GG 339
GG
Sbjct: 262 GG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 66.5 bits (155), Expect = 3e-11
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +1
Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 333
+A L G +P A D+ IL SVG E D K++ ++++++GKD+ +LIA GREK +S+P G
Sbjct: 9 MAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSG 68
Query: 334 GG 339
GG
Sbjct: 69 GG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +1
Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 333
+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+ VG
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 48.4 bits (110), Expect = 8e-06
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +1
Query: 154 LAVLGGKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 318
+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 34.7 bits (76), Expect = 0.10
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 169 GKPTPAAADVEKILSSVGIEADAEKLKKVITELNGKD 279
G P P A V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 13 GPPPPPPA-VVKIIETVHIEADSAEFKSIVQRLTGKD 48
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 186 SWRGLATQHSQVNTRPRNAFFK 121
SW+GL ++SQ N RP FF+
Sbjct: 863 SWKGLIDRYSQANLRPEILFFE 884
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 335 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIF 201
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 338 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVGLPP 165
PPP I + A +S P+S+V + L+ SASA+ F+ + A +PP
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA-----AAFAPAPVAAEAIPP 1172
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 276 LAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLATQHSQVNTR 142
L EL DY LK VS + G N++ WR + ++N R
Sbjct: 1035 LCEELLDYILKNHQVSQEPKGILHAFNIALCWRAASLLKHKINRR 1079
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,278
Number of Sequences: 37544
Number of extensions: 181824
Number of successful extensions: 569
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -