Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J14
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   206   3e-54
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.90 
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    28   2.1  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   4.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   4.8  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   8.4  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  206 bits (503), Expect = 3e-54
 Identities = 97/181 (53%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
 Frame = +1

Query: 232 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 411
           MPQNEYIE   + +GRR D+                      RGIKAK++ ++RR EKIQ
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 412 MKKKIKAHEEKNV-KHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 588
           MKK IK HEE+N  +  ++   +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61  MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120

Query: 589 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 768
           +P+VR  A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KK
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180

Query: 769 A 771
           A
Sbjct: 181 A 181



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 762 QESHVTHPELKATFCLPIIGVKK 830
           ++++VTH EL  T  LPIIGVKK
Sbjct: 179 KKANVTHKELGVTMQLPIIGVKK 201



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 824 QEXPSSQMYTSLGVITKGTXIXV 892
           ++ P S  YT LGV+TKGT I V
Sbjct: 200 KKNPQSPTYTQLGVLTKGTVIEV 222


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 477 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 304
           F  LL   F +L F+ F F F    F++   I YF SF    F  LF  F+ +  F +  
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170

Query: 303 FSL 295
           FSL
Sbjct: 171 FSL 173


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/84 (26%), Positives = 45/84 (53%)
 Frame = +1

Query: 388 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 567
           E+ + K+++ ++     +K ++  TEK+ +  +     +R VQS  +   +M +QK +E 
Sbjct: 82  EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140

Query: 568 AGKWDVPIPKVRAQADAEVFKVLK 639
             K+     KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +1

Query: 604  AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 741
            A  +++  K+L +   K+   KR+V+++T +  N T    + +R++
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 438 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 316
           FV  D FL+   LF    LI +F+     F  LFS F    S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 457 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 591
           N  K +E    +  +++D+  R+ +LSN+ K        K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,262
Number of Sequences: 5004
Number of extensions: 61498
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)