Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J14
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 211 6e-55
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 30 2.2
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 29 5.0
04_03_0735 + 19141038-19143227 29 5.0
02_03_0378 + 18327622-18329826 29 5.0
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 29 6.6
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 6.6
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 211 bits (515), Expect = 6e-55
Identities = 104/179 (58%), Positives = 119/179 (66%)
Frame = +1
Query: 235 PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 414
PQ ++IE HQK +GRRLDY L G K K F K+R EK QM
Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392
Query: 415 KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 594
KK +K H+E + + V EGALP YLLDRD RAKVLSN IKQKR EKAGKW+VP+P
Sbjct: 393 KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452
Query: 595 KVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKA 771
KVR A+ E+FKVL++GK K K WKRMVTK TFVG FTRKPPK+ERFIRP LRF KA
Sbjct: 453 KVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKA 511
Score = 37.9 bits (84), Expect = 0.011
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3
Query: 750 GTEVQESHVTHPELKATFCLPIIGVKK 830
G ++HVTHPELK TF L II VKK
Sbjct: 505 GLRFTKAHVTHPELKCTFNLDIISVKK 531
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 824 QEXPSSQMYTSLGVITKGTXIXV 892
++ P+ QMY++LGV+T+GT I V
Sbjct: 530 KKNPNGQMYSTLGVLTRGTIIEV 552
>04_04_1253 +
32097840-32097963,32098154-32098329,32098413-32098622,
32098720-32098879,32098993-32099212,32099288-32099438
Length = 346
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +1
Query: 469 VAEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 636
VA GA P +D V + +++ M K EKA W +P+ + AE+F
Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260
Query: 637 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 729
+ S R + T VT + K P++
Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQY 291
>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
Length = 271
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 460 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 621
TE++ EG + L D++ + +M+K KEK K P P++ +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184
>04_03_0735 + 19141038-19143227
Length = 729
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +3
Query: 69 SCRRCESKYDFIR--LNHKLRC 128
SC RC +Y+++R LNH L C
Sbjct: 182 SCNRCRMQYEYLRIYLNHNLLC 203
>02_03_0378 + 18327622-18329826
Length = 734
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +3
Query: 69 SCRRCESKYDFIR--LNHKLRC 128
SC RC +Y+++R LNH L C
Sbjct: 193 SCNRCRMQYEYLRIYLNHNLLC 214
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 484 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 645
LP+Y +DRD + +LS + + R + A + +P+ + A + DA+ + +L G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 601 RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK--PPKFERFIRP 747
+ Q +V K +KSG KRK+ K++ T VTF +K PK+ R P
Sbjct: 13 KTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,871,720
Number of Sequences: 37544
Number of extensions: 363834
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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