Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J13
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    64   3e-11
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    64   3e-11
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.6  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.6  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.4  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = +2

Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 493
           ++   K L +WAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 96  KVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNET 335
           D+ QA LCVL E CD+ AY  LV+ALC E+
Sbjct: 61  DRRQAHLCVLCESCDQEAYVKLVEALCAES 90


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = +2

Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 493
           ++   K L +WAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 93  KVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNET 335
           D+ QA LCVL E CD+ AY  LV+ALC E+
Sbjct: 58  DRRQAHLCVLCESCDQEAYVKLVEALCAES 87


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 481 RWSFLAEIFDDNTGAADNFPCLAIL 407
           RW +LA +F  N  A  N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 156 NXHVVNPTRWGWW 118
           N H  +P  WGWW
Sbjct: 66  NEHPAHPQNWGWW 78


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 286 VMKPHTXNLFRLCATKHQIPLVKVDNNKKLGEMG 387
           V+ P T     +   KH I  VK D N KLG +G
Sbjct: 246 VLSPQTDVKEEVVEEKHVINDVKQDTNSKLGFVG 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,462
Number of Sequences: 5004
Number of extensions: 36641
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)