Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J13
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726...    83   2e-16
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264...    82   5e-16
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607...    29   6.6  

>07_01_0875 -
           7265529-7265588,7265681-7265746,7266008-7266293,
           7267138-7267142
          Length = 138

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 33/55 (60%), Positives = 46/55 (83%)
 Frame = +2

Query: 344 HWSRLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
           H   + + K+L +WAGLCKID +GKARK+VGCSCVV+KDFGEE+  L++++DY+K
Sbjct: 82  HLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESEGLNIVQDYVK 136



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
           +K  A LCVLAE CD+  Y  LV+ALC E
Sbjct: 50  EKHAAQLCVLAEDCDQPDYVKLVKALCAE 78


>07_01_0360 +
           2646279-2646283,2647113-2647398,2648043-2648108,
           2648199-2648258
          Length = 138

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 32/55 (58%), Positives = 46/55 (83%)
 Frame = +2

Query: 344 HWSRLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
           H   + + K+L +WAGLCKID +GKARK+VGCSCVV+KD+GEE+  L++++DY+K
Sbjct: 82  HLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQDYVK 136



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
           +K  A LCVLAE CD+  Y  LV+ALC E
Sbjct: 50  EKHAAQLCVLAEDCDQPDYVKLVKALCAE 78


>06_03_0908 -
           25858909-25859185,25859765-25859892,25860061-25860765,
           25860882-25860944,25861031-25861084,25861338-25861514,
           25861644-25861813,25862011-25862065,25862220-25862918,
           25863110-25863173,25863515-25863723,25866138-25866227,
           25866390-25866617
          Length = 972

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 293 SRIQXTCSGSVQRNIRFHWSRLTTTKSLEKWAGLCKIDKDGKARKIV 433
           SR+      S Q +I +HW      K L KWA    +++ G+  K V
Sbjct: 771 SRVTFALDRSYQSHIEYHWGGEGLRKYLVKWAS-SVVERRGRIEKQV 816


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,567
Number of Sequences: 37544
Number of extensions: 260341
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)