Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J13
(896 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC095424-1|AAH95424.1| 132|Homo sapiens ribosomal protein S12 p... 76 2e-13
BC071930-1|AAH71930.1| 132|Homo sapiens ribosomal protein S12 p... 76 2e-13
BC017321-1|AAH17321.1| 132|Homo sapiens ribosomal protein S12 p... 76 2e-13
AL137783-3|CAC12946.1| 132|Homo sapiens ribosomal protein S12 p... 76 2e-13
AB061840-1|BAB79478.1| 132|Homo sapiens ribosomal protein S12 p... 76 2e-13
X53505-1|CAA37582.1| 132|Homo sapiens ribosomal protein S12 pro... 74 6e-13
U50345-1|AAB03784.1| 133|Homo sapiens NANUC-2 heavy chain protein. 31 7.5
U50344-1|AAB03783.1| 121|Homo sapiens NANUC-1 heavy chain protein. 31 7.5
>BC095424-1|AAH95424.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 76.2 bits (179), Expect = 2e-13
Identities = 29/52 (55%), Positives = 42/52 (80%)
Frame = +2
Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
++ K L +W GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 78 KVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 41.1 bits (92), Expect = 0.005
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3
Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
DK QA LCVLA CDE Y LV+ALC E
Sbjct: 43 DKRQAHLCVLASNCDEPMYVKLVEALCAE 71
Score = 34.7 bits (76), Expect = 0.46
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 319 LCATKHQIPLVKVDNNKKLGE 381
LCA +HQI L+KVD+NKKLGE
Sbjct: 68 LCA-EHQINLIKVDDNKKLGE 87
>BC071930-1|AAH71930.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 76.2 bits (179), Expect = 2e-13
Identities = 29/52 (55%), Positives = 42/52 (80%)
Frame = +2
Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
++ K L +W GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 78 KVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 41.1 bits (92), Expect = 0.005
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3
Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
DK QA LCVLA CDE Y LV+ALC E
Sbjct: 43 DKRQAHLCVLASNCDEPMYVKLVEALCAE 71
Score = 34.7 bits (76), Expect = 0.46
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 319 LCATKHQIPLVKVDNNKKLGE 381
LCA +HQI L+KVD+NKKLGE
Sbjct: 68 LCA-EHQINLIKVDDNKKLGE 87
>BC017321-1|AAH17321.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 76.2 bits (179), Expect = 2e-13
Identities = 29/52 (55%), Positives = 42/52 (80%)
Frame = +2
Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
++ K L +W GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 78 KVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 41.1 bits (92), Expect = 0.005
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3
Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
DK QA LCVLA CDE Y LV+ALC E
Sbjct: 43 DKRQAHLCVLASNCDEPMYVKLVEALCAE 71
Score = 34.7 bits (76), Expect = 0.46
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 319 LCATKHQIPLVKVDNNKKLGE 381
LCA +HQI L+KVD+NKKLGE
Sbjct: 68 LCA-EHQINLIKVDDNKKLGE 87
>AL137783-3|CAC12946.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 76.2 bits (179), Expect = 2e-13
Identities = 29/52 (55%), Positives = 42/52 (80%)
Frame = +2
Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
++ K L +W GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 78 KVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 41.1 bits (92), Expect = 0.005
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3
Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
DK QA LCVLA CDE Y LV+ALC E
Sbjct: 43 DKRQAHLCVLASNCDEPMYVKLVEALCAE 71
Score = 34.7 bits (76), Expect = 0.46
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 319 LCATKHQIPLVKVDNNKKLGE 381
LCA +HQI L+KVD+NKKLGE
Sbjct: 68 LCA-EHQINLIKVDDNKKLGE 87
>AB061840-1|BAB79478.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 76.2 bits (179), Expect = 2e-13
Identities = 29/52 (55%), Positives = 42/52 (80%)
Frame = +2
Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
++ K L +W GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 78 KVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 41.1 bits (92), Expect = 0.005
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3
Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
DK QA LCVLA CDE Y LV+ALC E
Sbjct: 43 DKRQAHLCVLASNCDEPMYVKLVEALCAE 71
Score = 34.7 bits (76), Expect = 0.46
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 319 LCATKHQIPLVKVDNNKKLGE 381
LCA +HQI L+KVD+NKKLGE
Sbjct: 68 LCA-EHQINLIKVDDNKKLGE 87
>X53505-1|CAA37582.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 74.1 bits (174), Expect = 6e-13
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +2
Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
++ K L +W GLCKID++G RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 78 KVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 34.7 bits (76), Expect = 0.46
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
DK QA LCV A CDE Y LV+AL E
Sbjct: 43 DKRQAHLCVQASNCDEPMYVKLVEALLAE 71
Score = 33.5 bits (73), Expect = 1.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 292 KPHTXNLFRLCATKHQIPLVKVDNNKKLGE 381
+P L +HQI L+KVD+NKKLGE
Sbjct: 58 EPMYVKLVEALLAEHQINLIKVDDNKKLGE 87
>U50345-1|AAB03784.1| 133|Homo sapiens NANUC-2 heavy chain protein.
Length = 133
Score = 30.7 bits (66), Expect = 7.5
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 296 RIQXTCSGSVQRNIRFHWSRLTTTKSLEKWAGLCKIDKDGKARKIV 433
R+ SG RN HW R K LE AG I DG+ +K V
Sbjct: 15 RLSCAASGFTFRNYGMHWVRQAPGKGLEWVAG---ISSDGRKKKYV 57
>U50344-1|AAB03783.1| 121|Homo sapiens NANUC-1 heavy chain protein.
Length = 121
Score = 30.7 bits (66), Expect = 7.5
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 296 RIQXTCSGSVQRNIRFHWSRLTTTKSLEKWAGLCKIDKDGKARKIV 433
R+ SG RN HW R K LE AG I DG+ +K V
Sbjct: 16 RLSCAASGFTFRNYGMHWVRQAPGKGLEWVAG---ISSDGRKKKYV 58
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,124,717
Number of Sequences: 237096
Number of extensions: 1466577
Number of successful extensions: 2509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2509
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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