Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J13
         (896 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89659-1|CAA61806.1|  151|Drosophila melanogaster 40S ribosomal ...    85   2e-16
AY058531-1|AAL13760.1|  139|Drosophila melanogaster LD23808p pro...    85   2e-16
AE014296-2235|AAN11844.2|  139|Drosophila melanogaster CG11271-P...    85   2e-16
AE014296-2234|AAN11845.1|  139|Drosophila melanogaster CG11271-P...    85   2e-16

>X89659-1|CAA61806.1|  151|Drosophila melanogaster 40S ribosomal
           protein S12 protein.
          Length = 151

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 45/52 (86%)
 Frame = +2

Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
           R+ + K L +W+GLCKIDK+GK RK+ GCS VVIKDFGEETPALDV+KD+L+
Sbjct: 97  RVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 148



 Score = 46.4 bits (105), Expect = 5e-05
 Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 90  TXAXVAVXVPTN-PILSGSQHGRXXXXXXKRC*RPALIXXXXXXXXXXXXXXXDKXQAVL 266
           T A V V VP+  P+L G+          +   + +LI               DK QAVL
Sbjct: 12  TMADVDVDVPSAAPVLDGAMD---INTALQEVLKKSLIADGLVHGIHQACKALDKRQAVL 68

Query: 267 CVLAEXCDEAAYKXLVQALCNE 332
           C+LAE  DE  YK LV ALCNE
Sbjct: 69  CILAESFDEPNYKKLVTALCNE 90



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 292 KPHTXNLFRLCATKHQIPLVKVDNNKKLGEMGWS 393
           +P+   L      +HQIPL++VD++KKLGE  WS
Sbjct: 77  EPNYKKLVTALCNEHQIPLIRVDSHKKLGE--WS 108


>AY058531-1|AAL13760.1|  139|Drosophila melanogaster LD23808p
           protein.
          Length = 139

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 45/52 (86%)
 Frame = +2

Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
           R+ + K L +W+GLCKIDK+GK RK+ GCS VVIKDFGEETPALDV+KD+L+
Sbjct: 85  RVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
           DK QAVLC+LAE  DE  YK LV ALCNE
Sbjct: 50  DKRQAVLCILAESFDEPNYKKLVTALCNE 78



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 292 KPHTXNLFRLCATKHQIPLVKVDNNKKLGEMGWS 393
           +P+   L      +HQIPL++VD++KKLGE  WS
Sbjct: 65  EPNYKKLVTALCNEHQIPLIRVDSHKKLGE--WS 96


>AE014296-2235|AAN11844.2|  139|Drosophila melanogaster CG11271-PC,
           isoform C protein.
          Length = 139

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 45/52 (86%)
 Frame = +2

Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
           R+ + K L +W+GLCKIDK+GK RK+ GCS VVIKDFGEETPALDV+KD+L+
Sbjct: 85  RVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
           DK QAVLC+LAE  DE  YK LV ALCNE
Sbjct: 50  DKRQAVLCILAESFDEPNYKKLVTALCNE 78



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 292 KPHTXNLFRLCATKHQIPLVKVDNNKKLGEMGWS 393
           +P+   L      +HQIPL++VD++KKLGE  WS
Sbjct: 65  EPNYKKLVTALCNEHQIPLIRVDSHKKLGE--WS 96


>AE014296-2234|AAN11845.1|  139|Drosophila melanogaster CG11271-PB,
           isoform B protein.
          Length = 139

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 45/52 (86%)
 Frame = +2

Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 508
           R+ + K L +W+GLCKIDK+GK RK+ GCS VVIKDFGEETPALDV+KD+L+
Sbjct: 85  RVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
           DK QAVLC+LAE  DE  YK LV ALCNE
Sbjct: 50  DKRQAVLCILAESFDEPNYKKLVTALCNE 78



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 292 KPHTXNLFRLCATKHQIPLVKVDNNKKLGEMGWS 393
           +P+   L      +HQIPL++VD++KKLGE  WS
Sbjct: 65  EPNYKKLVTALCNEHQIPLIRVDSHKKLGE--WS 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,676,184
Number of Sequences: 53049
Number of extensions: 438341
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)