Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J13
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    54   1e-07
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    29   6.0  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +2

Query: 353 RLTTTKSLEKWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 502
           ++   K + ++ GLCK DK+GKARK+VGCS  V+ ++G E     +L DY
Sbjct: 86  KVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +3

Query: 246 DKXQAVLCVLAEXCDEAAYKXLVQALCNE 332
           DK +A  CVLAE CDE  Y  LV+ LC E
Sbjct: 51  DKREAHFCVLAENCDEPQYVKLVETLCAE 79



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 319 LCATKHQIPLVKVDNNKKLGE 381
           LCA +HQIPL+KV + K +GE
Sbjct: 76  LCA-EHQIPLIKVADKKIIGE 95


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
           protein C44E4.1a protein.
          Length = 2712

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = -3

Query: 480 AGVSSPKSLMTTQEQPTIFLALPSLSILQRPAHFSKLFVVVN---LDQWNLMFRCTEPEQ 310
           AG  + K L      P +        +   P+   +LF +++   L +W  +   TE E 
Sbjct: 462 AGNMAKKHLSRKLNHPAVCSVSTRAIVKCHPSVDEELFKIIDGAYLQEWKALIDWTESEG 521

Query: 309 VXCMRLHHSXQ 277
              MRLHH  Q
Sbjct: 522 FGEMRLHHVEQ 532


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
           protein C44E4.1c protein.
          Length = 2710

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = -3

Query: 480 AGVSSPKSLMTTQEQPTIFLALPSLSILQRPAHFSKLFVVVN---LDQWNLMFRCTEPEQ 310
           AG  + K L      P +        +   P+   +LF +++   L +W  +   TE E 
Sbjct: 462 AGNMAKKHLSRKLNHPAVCSVSTRAIVKCHPSVDEELFKIIDGAYLQEWKALIDWTESEG 521

Query: 309 VXCMRLHHSXQ 277
              MRLHH  Q
Sbjct: 522 FGEMRLHHVEQ 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,229
Number of Sequences: 27780
Number of extensions: 223381
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)