Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J12
         (955 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0044 - 21819193-21819418,21819531-21820759                       31   1.0  
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    31   1.4  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    30   3.1  
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828...    29   4.1  

>05_05_0044 - 21819193-21819418,21819531-21820759
          Length = 484

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 369 MPLLLTILERRRKRPQLMNRSTTWDPILARS 461
           MPL L +L+R++++ QL+ R T WD  L  S
Sbjct: 112 MPLSLRMLKRKKQQQQLVARQTRWDERLLGS 142


>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 296 REVSVLFVQSHELGSSRHGELVSAGT--RRHGDRSCCLASHHQRDCHAVVVDLFQ 138
           +E S++F Q+   G    G+ + A     R+ +  CC+ASH  +    + +DL Q
Sbjct: 624 KEFSLIFSQAPNRGGKAPGDSLDAQRWWNRYVEAQCCIASHDYKGGLDIYLDLMQ 678


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 161 AVVVDLFQSLGPGYYYLPSWLQLQLVCLYNNXKNDIKNLXGI 36
           +V++ L Q L  G       + + ++CLYNN  + ++NL GI
Sbjct: 806 SVIMFLLQFLCKGRTNAIGKINVGIICLYNNRMDALRNLLGI 847


>07_03_1483 +
           26881032-26882035,26882130-26882204,26882324-26882861,
           26883999-26884895,26885178-26885327,26885459-26885791,
           26886501-26886695,26887805-26887918
          Length = 1101

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 157 LWLT-SSKALGLGIIICHPGCN 95
           LWL  +S ++G G IICH GC+
Sbjct: 336 LWLVQNSNSIGQGYIICHLGCH 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,855,422
Number of Sequences: 37544
Number of extensions: 341679
Number of successful extensions: 835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)