Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J11
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   2.7  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   4.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   6.1  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +3

Query: 486 SKRPGTVKRPRCWRF--SIGS--APLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSLRS 653
           S+ P T+ RP  +R   S+G+  +PL S +++D      E+  D  +T      +P+   
Sbjct: 316 SRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSPTAAP 375

Query: 654 PVPTLPLTGYLS 689
           P P+   TG L+
Sbjct: 376 PPPSRRKTGGLN 387


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 661 RPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 828
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 766  APSWAVCTNPPFSPTAAPYPVLSS*VNPVXTTYRP 870
            +PS++  T+P +SPT+  Y   S   +P   +Y P
Sbjct: 1589 SPSYSP-TSPSYSPTSPSYSATSPSYSPTSPSYSP 1622



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 766  APSWAVCTNPPFSPTAAPYPVLSS*VNPVXTTYRP 870
            +PS++  T+P +SPT+  Y   S   +P   +Y P
Sbjct: 1603 SPSYSA-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,543
Number of Sequences: 5004
Number of extensions: 67714
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)