Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J07
(879 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase ... 199 1e-50
AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase defi... 199 1e-50
AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein. 199 1e-50
AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein. 199 1e-50
AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein. 175 2e-43
CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein. 158 2e-38
BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase ... 158 2e-38
BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase defi... 158 2e-38
AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens ... 158 2e-38
AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase as... 158 2e-38
AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain... 34 0.78
AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain... 34 0.78
AK002043-1|BAA92051.1| 122|Homo sapiens protein ( Homo sapiens ... 31 4.2
BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for S... 31 7.3
AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens ... 31 7.3
AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone recepto... 31 7.3
AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor int... 31 7.3
>BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase
deficient homolog 1 (yeast) protein.
Length = 301
Score = 199 bits (485), Expect = 1e-50
Identities = 83/155 (53%), Positives = 115/155 (74%)
Frame = +1
Query: 280 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 459
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 460 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 639
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 640 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFS 744
+ Y KEF+P+L+GLTGT+E+V Q ++YRVY+S
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYS 246
Score = 65.7 bits (153), Expect = 2e-10
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +2
Query: 749 GPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNR 850
GP+D D DYIVDHTII+YL+ PDGEF+DY+GQN+
Sbjct: 248 GPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK 281
>AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase
deficient in yeast homolog 1 protein.
Length = 301
Score = 199 bits (485), Expect = 1e-50
Identities = 83/155 (53%), Positives = 115/155 (74%)
Frame = +1
Query: 280 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 459
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 460 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 639
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 640 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFS 744
+ Y KEF+P+L+GLTGT+E+V Q ++YRVY+S
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYS 246
Score = 65.7 bits (153), Expect = 2e-10
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +2
Query: 749 GPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNR 850
GP+D D DYIVDHTII+YL+ PDGEF+DY+GQN+
Sbjct: 248 GPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK 281
>AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein.
Length = 301
Score = 199 bits (485), Expect = 1e-50
Identities = 83/155 (53%), Positives = 115/155 (74%)
Frame = +1
Query: 280 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 459
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 460 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 639
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 640 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFS 744
+ Y KEF+P+L+GLTGT+E+V Q ++YRVY+S
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYS 246
Score = 65.7 bits (153), Expect = 2e-10
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +2
Query: 749 GPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNR 850
GP+D D DYIVDHTII+YL+ PDGEF+DY+GQN+
Sbjct: 248 GPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK 281
>AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein.
Length = 301
Score = 199 bits (485), Expect = 1e-50
Identities = 83/155 (53%), Positives = 115/155 (74%)
Frame = +1
Query: 280 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 459
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 460 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 639
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 640 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFS 744
+ Y KEF+P+L+GLTGT+E+V Q ++YRVY+S
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYS 246
Score = 65.7 bits (153), Expect = 2e-10
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +2
Query: 749 GPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNR 850
GP+D D DYIVDHTII+YL+ PDGEF+DY+GQN+
Sbjct: 248 GPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK 281
>AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein.
Length = 190
Score = 175 bits (426), Expect = 2e-43
Identities = 73/135 (54%), Positives = 101/135 (74%)
Frame = +1
Query: 340 MMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPD 519
M +VKKEK E L++ER++ +GK +GG F L G+ D+LG+W+LIYFGFTHCPD
Sbjct: 1 MKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPD 60
Query: 520 ICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKEFTPRLLGLTGTK 699
+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E + Y KEF+P+L+GLTGT+
Sbjct: 61 VCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTR 120
Query: 700 EQVQQACKSYRVYFS 744
E+V Q ++YRVY+S
Sbjct: 121 EEVDQVARAYRVYYS 135
Score = 65.7 bits (153), Expect = 2e-10
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +2
Query: 749 GPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNR 850
GP+D D DYIVDHTII+YL+ PDGEF+DY+GQN+
Sbjct: 137 GPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK 170
>CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein.
Length = 266
Score = 158 bits (384), Expect = 2e-38
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +1
Query: 307 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 483
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 484 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 663
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 664 FTPRLLGLTGTKEQVQQACKSYRVYFS 744
F PRLLGLTG+ +QV QA SYRVY++
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYYN 210
Score = 64.5 bits (150), Expect = 5e-10
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +2
Query: 746 AGPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKXL 865
AGP+D D DYIVDH+I +YL+NPDG F DYYG++R+A+ +
Sbjct: 211 AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQI 250
>BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase
deficient homolog 2 (yeast) protein.
Length = 266
Score = 158 bits (384), Expect = 2e-38
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +1
Query: 307 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 483
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 484 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 663
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 664 FTPRLLGLTGTKEQVQQACKSYRVYFS 744
F PRLLGLTG+ +QV QA SYRVY++
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYYN 210
Score = 64.5 bits (150), Expect = 5e-10
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +2
Query: 746 AGPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKXL 865
AGP+D D DYIVDH+I +YL+NPDG F DYYG++R+A+ +
Sbjct: 211 AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQI 250
>BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase
deficient homolog 2 protein.
Length = 266
Score = 158 bits (384), Expect = 2e-38
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +1
Query: 307 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 483
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 484 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 663
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 664 FTPRLLGLTGTKEQVQQACKSYRVYFS 744
F PRLLGLTG+ +QV QA SYRVY++
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYYN 210
Score = 64.5 bits (150), Expect = 5e-10
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +2
Query: 746 AGPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKXL 865
AGP+D D DYIVDH+I +YL+NPDG F DYYG++R+A+ +
Sbjct: 211 AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQI 250
>AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens
cDNA homologous to Yeast SCO1 & SCO2 genes and
C.elegans C01F1.2 gene. ).
Length = 266
Score = 158 bits (384), Expect = 2e-38
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +1
Query: 307 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 483
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 484 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 663
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 664 FTPRLLGLTGTKEQVQQACKSYRVYFS 744
F PRLLGLTG+ +QV QA SYRVY++
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYYN 210
Score = 64.5 bits (150), Expect = 5e-10
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +2
Query: 746 AGPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKXL 865
AGP+D D DYIVDH+I +YL+NPDG F DYYG++R+A+ +
Sbjct: 211 AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQI 250
>AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase
assembly protein isoform 2 protein.
Length = 266
Score = 158 bits (384), Expect = 2e-38
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +1
Query: 307 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 483
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 484 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 663
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 664 FTPRLLGLTGTKEQVQQACKSYRVYFS 744
F PRLLGLTG+ +QV QA SYRVY++
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYYN 210
Score = 64.5 bits (150), Expect = 5e-10
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +2
Query: 746 AGPQDVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKXL 865
AGP+D D DYIVDH+I +YL+NPDG F DYYG++R+A+ +
Sbjct: 211 AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQI 250
>AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain 4
protein protein.
Length = 3567
Score = 33.9 bits (74), Expect = 0.78
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +1
Query: 466 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELV 645
D L M + TH + PD +EKL V + D + L P S +RDTP V
Sbjct: 1208 DVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVPVPDVMMPNSMLLPAAASEKSERDTPAAV 1267
Query: 646 -----GKYCKE 663
GKY E
Sbjct: 1268 TAEGSGKYSGE 1278
>AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain
protein 4 protein.
Length = 3599
Score = 33.9 bits (74), Expect = 0.78
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +1
Query: 466 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELV 645
D L M + TH + PD +EKL V + D + L P S +RDTP V
Sbjct: 1253 DVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVPVPDVMMPNSMLLPAAASEKSERDTPAAV 1312
Query: 646 -----GKYCKE 663
GKY E
Sbjct: 1313 TAEGSGKYSGE 1323
>AK002043-1|BAA92051.1| 122|Homo sapiens protein ( Homo sapiens
cDNA FLJ11181 fis, clone PLACE1007460. ).
Length = 122
Score = 31.5 bits (68), Expect = 4.2
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 488 NIHFPKKSAL-LTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 312
++H+P AL +T+L S K P I +C F + C + + V PPP T
Sbjct: 14 DVHWPHGLALGITSLEVPVPSDKGPWIH-MTACLFFLETGPHCREVIVKVSNPVMPPPAT 72
Query: 311 TVAAIDFH 288
D H
Sbjct: 73 LTWERDTH 80
>BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 6, 77kDa protein.
Length = 651
Score = 30.7 bits (66), Expect = 7.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 217 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 390
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 391 KQL 399
+L
Sbjct: 185 SEL 187
>AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens
cDNA FLJ10812 fis, clone NT2RP4000975. ).
Length = 651
Score = 30.7 bits (66), Expect = 7.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 217 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 390
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 391 KQL 399
+L
Sbjct: 185 SEL 187
>AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP80
protein.
Length = 651
Score = 30.7 bits (66), Expect = 7.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 217 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 390
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 391 KQL 399
+L
Sbjct: 185 SEL 187
>AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor
interacting protein protein.
Length = 652
Score = 30.7 bits (66), Expect = 7.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 217 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 390
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 391 KQL 399
+L
Sbjct: 185 SEL 187
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,044,910
Number of Sequences: 237096
Number of extensions: 2538264
Number of successful extensions: 6503
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6498
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -