Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J06
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 35 0.013
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 29 1.1
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ... 27 2.6
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 2.6
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 3.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 4.6
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 4.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 6.1
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 26 6.1
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 6.1
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 26 8.0
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 35.1 bits (77), Expect = 0.013
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 39 LKILTRNLVSFGFY*RAVVGYCETTLQIQCSRSLYLLSHSRAFNLLIVGS--YSHYRATI 212
+ +++RNL F F+ R + E TL++ + L L+ F ++ S + +T
Sbjct: 376 IPLISRNLRDFSFFKRCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHSTS 435
Query: 213 YDSSSMVTICGVNK*PRVNYLDSRQRP 293
SS ++CG N+ + + R RP
Sbjct: 436 LLSSQPCSLCGFNRTQPLRQFEFRSRP 462
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 341 KWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPL 520
K + +D F+ D I++ERF + + L ++ P S+ S + +ENY
Sbjct: 58 KSSFNDKTFNESD-VISNERFKSNDLLELLPAPKNQAELAPKSSKRSDLDLNENYLLPNN 116
Query: 521 KSSDFQKTGKKQ 556
SD TG +
Sbjct: 117 SVSDLTSTGSSE 128
>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 416 SRPLKTFRMLCSCLDYGNRCPTKPTLQLSQLTPYPKSCISFG 291
+RP++ R + SC +YG+RC L L + P +C + G
Sbjct: 63 NRPVRE-RSIESCFEYGSRCGFWRILNLFKKHKVPFTCWAIG 103
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 319 LIPNHVFHLG-RCRLSR*FT--LGYLFTPQIVTIDELSYIVAR 200
++ N H+ +C L FT L+ P I+ +DE+ +++AR
Sbjct: 252 ILENEDHHINFQCELESHFTQSANELYNPVIIVLDEMDHLIAR 294
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 425 STSSRPLKTFRMLCSC 378
STS+ LKTFR +C C
Sbjct: 612 STSAEELKTFRAMCKC 627
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 401 FSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 502
++TG N +WY+ N P +AL SW EH N
Sbjct: 327 WTTG-NYHWYLKKEINI---PQNALISWHPEHAN 356
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 272 SGQPAATQMKYMIWDKELAAKAAKWASSDN--DFHNPDRSIASER 400
S P+ + Y D E++ A+ A N + H+P RSI+SE+
Sbjct: 597 SNSPSDIESNYSADDNEISKSKAQNAIDFNVTNTHSPSRSISSEK 641
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 356 PTKPTLQLSQLTPYPKSCISFGSLPAVQI 270
P++ + +SQ++ K C S+ SLP +Q+
Sbjct: 336 PSQNDISVSQISVDEKICTSYESLPKIQL 364
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 263 GELSGQPAATQMKYMIWDKELAAKAAKWASSDNDFHNPDRSIASERF 403
G+++ + A MIWDK++A A D++ SI+ R+
Sbjct: 411 GQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 677 NYLGNIPYKSGEPSNRLVCGAGDCSKP 757
N+ G I K+ EPS R++C C KP
Sbjct: 760 NHTGEITRKATEPSIRIICNF--CRKP 784
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 467 SALESWFNEHENYKFAPLKSSDFQKTGKKQIAHYT 571
++LE FN H NY + L F + K+ I T
Sbjct: 64 NSLEKHFNRHFNYPYTFLNDEPFDEKFKETILKLT 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,688
Number of Sequences: 5004
Number of extensions: 76915
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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