Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J05
(1124 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.29
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.90
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.90
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.90
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 1.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.29
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 842 PPPXPPXXXGGXGXXXXIXXXXXXXXXXPPPPPPPPP 732
PPP PP I PPPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 30.7 bits (66), Expect = 0.39
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -1
Query: 842 PPPXPPXXXGGXGXXXXIXXXXXXXXXXPPPPPPPPP 732
PPP PP G G PPPPPPPPP
Sbjct: 762 PPPPPPPGVAGAG---------------PPPPPPPPP 783
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.90
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 758 PPPPPPPPP 732
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.90
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 758 PPPPPPPPP 732
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 8.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 758 PPPPPPPPP 732
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.90
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 758 PPPPPPPPP 732
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 758 PPPPPPPPPXXXKK 717
PPPPPPPP KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = -1
Query: 758 PP--PPPPPPPXXXKKXXKKKXXXXG 687
PP PPPPPPP KK K G
Sbjct: 20 PPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 758 PPPPPPPP 735
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 755 PPPPPPPP 732
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 1.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 758 PPPPPPPP 735
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 755 PPPPPPPP 732
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -1
Query: 842 PPPXPPXXXGGXGXXXXIXXXXXXXXXXPPPPPPP 738
PPP PP G PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPI--GNGSSNSSLPPPPPPP 343
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 755 PPPPPPPPXXXKKXXKKK 702
PPPPPPPP K +
Sbjct: 370 PPPPPPPPELLNHSPKSR 387
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 758 PPPPPPPP 735
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,081
Number of Sequences: 5004
Number of extensions: 10359
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 597654600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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