Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J04
(981 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.046
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.046
Identities = 22/92 (23%), Positives = 24/92 (26%)
Frame = +2
Query: 680 PPPPPPXXWGXXPXXXXPXXSTPGXPPRRPNXXAXXGXXXPXPXRTXXXXXLXSXRPTHX 859
PPPPPP P PP P G P + + P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 860 XHGXPARPXAGERHXLRTPPGRRXAXXPXPXP 955
PA P G TPP P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Score = 27.9 bits (59), Expect = 2.3
Identities = 24/102 (23%), Positives = 26/102 (25%), Gaps = 1/102 (0%)
Frame = +1
Query: 619 PRPHSEXARAXRAXPLXGGXPAXPPPXXLGXXAXAPXPXXLXTGRXPPXXQPPRPXXGPX 798
P P S A + P P PPP P P P PP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 799 PAAXXHXXXPXXXVXAAXXPTXRXP-RPPXRXGEAXPANPSG 921
PA P P PP A P+ P G
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG 442
Score = 26.6 bits (56), Expect = 5.3
Identities = 22/94 (23%), Positives = 23/94 (24%)
Frame = +2
Query: 683 PPPPPXXWGXXPXXXXPXXSTPGXPPRRPNXXAXXGXXXPXPXRTXXXXXLXSXRPTHXX 862
PP PP P P S P PP P P R S P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP---VSMNPAINS 286
Query: 863 HGXPARPXAGERHXLRTPPGRRXAXXPXPXPXXR 964
P P R + P P P R
Sbjct: 287 TSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRR 320
Score = 26.2 bits (55), Expect = 7.1
Identities = 22/69 (31%), Positives = 22/69 (31%)
Frame = +1
Query: 526 PXPPTPXXWXXXXKTHXPPPTXXXGLFXXGGPRPHSEXARAXRAXPLXGGXPAXPPPXXL 705
P PTP PP G P A A PL G PA PP L
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPS--LPMGAPAAPPLPPSAPIAPPLPAGMPAAPP---L 469
Query: 706 GXXAXAPXP 732
A AP P
Sbjct: 470 PPAAPAPPP 478
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 671 GVXPPPPPPXXWGXXPXXXXPXXSTPGXPPRRPN 772
G PPPPPP G P P PG +R N
Sbjct: 7 GNPPPPPPPP--GFEPPSQPPPPPPPGYVKKRKN 38
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +1
Query: 721 APXPXXLXTGRXPPXXQPPRPXXGPXPAAXXHXXXPXXXVXAAXXPTXRXPRPPXRXGEA 900
AP P + PP PPRP P A + P P P + +
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186
Query: 901 XPANPS 918
P+ PS
Sbjct: 187 APSLPS 192
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.3
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Frame = +1
Query: 631 SEXARAXRAXPLXGGXPAXP---PPXXLGXXAXAPXPXXLXTGRXPPXXQPPRPXXGPXP 801
S+ A A A G PA P PP + + AP T PP PP P P P
Sbjct: 1667 SKDAAALAAKLFGGMAPAHPVSTPP--VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Query: 802 AAXXHXXXPXXXVXAA 849
A P +A
Sbjct: 1725 AGPPSAPPPPLPASSA 1740
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 661 PLXGGXPAXPPPXXLGXXAXAPXPXXLXTGRXPPXXQPPRP 783
P P PP +G P P + G PP PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGV-AGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 683 PPPPPXXWGXXPXXXXPXXSTPGXPPRRP 769
PPP P G P P + G PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 671 GVXPPPPPPXXWGXXPXXXXP 733
G PPPPPP G P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -1
Query: 768 GRRGGSPGVEXXGXWXXGXXPQXXGGGGGGXTPXXRGRAXGSG 640
G GG PG G G P GGG GG G G G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 768 GRRGGSPGVEXXGXWXXGXXPQXXGGGGGG 679
G GG PG G G P GGG GG
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,857
Number of Sequences: 5004
Number of extensions: 29017
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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