Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J03
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    93   5e-20
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    29   1.1  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    29   1.1  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    27   2.7  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.5  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 55/141 (39%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
 Frame = +2

Query: 236 LQSQVRIGGKGTPSRKQQVVHVTAATXXXXXXXXXXXXXVN--TIPGIEXVNMIKEDGTV 409
           LQ+  RIGGKGTP RK +    +A +             +N   + GI+ VNM KEDG V
Sbjct: 9   LQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGV 68

Query: 410 IHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPK-- 583
           I+F  P   +SL   T AI G  E K  +E+LPGIL+ LGP+ L  L+++A  +   +  
Sbjct: 69  INFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGE 128

Query: 584 ----PLEEDDEVPNLVGNFDE 634
                  +D E+P+LV  FDE
Sbjct: 129 KGADAQADDGEIPDLVEKFDE 149


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 761 FAHLHVKGFRSHLCLKXMIFTFISIRSWVYELHHVL 868
           + H++VK  +S  C+     + IS   W+ ELH +L
Sbjct: 441 YVHIYVKSSKSWRCMSQTHVSSISNLVWLNELHQLL 476


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 595 FLEWLRRGNTRRNPFQSVQPVGSELAEDT 509
           F++WL  GN+ R PF       SE  E+T
Sbjct: 126 FVDWLGMGNSSRPPFDIKGQTASEKVEET 154


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +2

Query: 428 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDEV 607
           + + +L++   A+      ++    +   ++ LGPD  ++ K I SS      L+ +D +
Sbjct: 211 RPEEALSSLKTALDSQPNYEEALSNMTTAITDLGPDAPSQAKNILSSFTNSSTLKLNDHL 270

Query: 608 PNLVGNFDEASKQ 646
                 FD  S Q
Sbjct: 271 NEKAQEFDTFSTQ 283


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 515 LSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAXGS 661
           +S +G +  +  K++A      + +E++DE  NL G+F E S ++   S
Sbjct: 420 VSSVGKEQNHTEKQVAIETPEQQKVEKEDEHLNLQGSFIEESTKQPISS 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,180
Number of Sequences: 5004
Number of extensions: 43396
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)