Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_J03
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 109 2e-24
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 105 5e-23
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 74 1e-13
12_02_0628 + 21357876-21359921 29 3.7
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 3.7
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 28 8.5
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 28 8.5
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 28 8.5
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 109 bits (263), Expect = 2e-24
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 13/160 (8%)
Frame = +2
Query: 209 SMHSAXXKXLQSQVRIGGKGTPSRKQQVVHVTAATXXXXXXXXXXXXXVNTIPGIEXVNM 388
SM+ K + VR GGKG+ RK++ VH T T VN IPGIE VN+
Sbjct: 440 SMNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNI 499
Query: 389 IKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA-- 562
K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 500 FKDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQ 558
Query: 563 ---------SSVAAPKPLEEDDEVPNLV--GNFDEASKQE 649
+ +A ++DD+VP LV F+EA++++
Sbjct: 559 FQKQVPGAEAGASAGNAQDDDDDVPELVPGETFEEAAEEK 598
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 105 bits (252), Expect = 5e-23
Identities = 53/125 (42%), Positives = 73/125 (58%)
Frame = +2
Query: 230 KXLQSQVRIGGKGTPSRKQQVVHVTAATXXXXXXXXXXXXXVNTIPGIEXVNMIKEDGTV 409
K + VR GGKG+ RK++ VH T T VNTIPGIE VN+ K+D V
Sbjct: 8 KKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VV 66
Query: 410 IHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPL 589
I F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A P
Sbjct: 67 IQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLAEQFQKQAPG 126
Query: 590 EEDDE 604
+E
Sbjct: 127 ASGEE 131
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 74.1 bits (174), Expect = 1e-13
Identities = 55/141 (39%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Frame = +2
Query: 248 VRIGGKGTPSRKQQVVHVTAATXXXXXXXXXXXXXVNTIPGIEXVNMIKEDGTVIHFNNP 427
VR GGKGT RK++ VH T T VNTIP IE VN+ K+D VI F NP
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNP 63
Query: 428 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRI---------ASSVAAP 580
K+ ++LPGI++QLGPD + LKRI A+ A
Sbjct: 64 -------------------KELQDVLPGIINQLGPDNMEHLKRIAEEMQKQVAAAGATAQ 104
Query: 581 KPLEEDDEVPNLV--GNFDEA 637
E DD+VP LV NF+E+
Sbjct: 105 AKEENDDDVPELVPGENFEES 125
>12_02_0628 + 21357876-21359921
Length = 681
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 137 QDATRNEGDXGTGXXARGXDTGEGQREKGQKXKEARVGEA 18
Q A R G G G ARG +G+GQR Q+ + R G +
Sbjct: 13 QAAGRTTG-AGKGGGARGPSSGQGQRWSSQQQQRGRRGSS 51
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 543 FNPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 442
F P GP W + PGS + +PCP A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 533 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 637
+G + + A +P++ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 533 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 637
+G + + A +P++ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 533 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 637
+G + + A +P++ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,005,550
Number of Sequences: 37544
Number of extensions: 321665
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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