Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J03
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   167   1e-41
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    31   1.4  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  167 bits (405), Expect = 1e-41
 Identities = 81/139 (58%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
 Frame = +2

Query: 239 QSQVRIGGKGTPSRKQQVVHVTAATXXXXXXXXXXXXXVNTIPGIEXVNMIKEDGTVIHF 418
           Q  VRIGGKGTP RK++V+H TAA              V  IPGIE VNMIK+DGTVIHF
Sbjct: 17  QEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHF 76

Query: 419 NNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVA--APKPLE 592
           NNPK Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP+ L  LK++A++V    P    
Sbjct: 77  NNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLKKLANNVTKLGPDGKG 136

Query: 593 EDDEVPNLVGNFDEASKQE 649
           ED++VP LVG+FD ASK E
Sbjct: 137 EDEDVPELVGDFDAASKNE 155


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 518 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFD 631
           S+ G  G +RL   A+  A P  ++   ++PNL  NFD
Sbjct: 203 SEAGSTGKDRLLVTAAVAAGPATIDAGYDIPNLAPNFD 240


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 328 AVIAQKVVSEHNSWHRXGKYDQRGR 402
           ++I+  V + H++WH  G  D RGR
Sbjct: 34  SIISGDVNAHHSAWHSEGSEDTRGR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,455
Number of Sequences: 27780
Number of extensions: 269493
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)