Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J02
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.22 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.67 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.2  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   8.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 31/124 (25%), Positives = 35/124 (28%), Gaps = 3/124 (2%)
 Frame = +2

Query: 197  PXXXXPPXPXXXKXXPPXGPKXKXPPFXXKKKXKSVXPPPXXXXXPPX---CLXIPXXTG 367
            P    PP P      PP       PP    K   +  P P     PP     +  P    
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVP--KPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154

Query: 368  GGGXXPPPXXXXXGGXXGPPVQAVTKXNTGPXRNNTGXPXXPRGGXAPPXXXXQKGVLXX 547
              G  P P          PPV A +       +   G P  P    APP      GV   
Sbjct: 1155 PSGAPPVPKP----SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 548  PXSS 559
            P  S
Sbjct: 1211 PPPS 1214



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/65 (29%), Positives = 22/65 (33%)
 Frame = +2

Query: 197  PXXXXPPXPXXXKXXPPXGPKXKXPPFXXKKKXKSVXPPPXXXXXPPXCLXIPXXTGGGG 376
            P    PP P      PP  P  + PP    K    V P P     PP    +P  + G  
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPP--VPKPSVGVPPVPPPSTAPP----VPTPSAGLP 1227

Query: 377  XXPPP 391
              P P
Sbjct: 1228 PVPVP 1232


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 24/76 (31%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
 Frame = -1

Query: 392 GGGVXXPPPXXG-XGX*GTXGGXXXXXGGXXHFFXFFXGKXGGXXFXAPGGGXFFXXXGP 216
           GGG   PPP  G  G  G  GG     GG   F     G  GG      G G F    G 
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 215 GXXXXXGXXXXPXXXG 168
                 G    P   G
Sbjct: 254 FGGGPGGFGGGPGGHG 269


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 426 GGPXXPPXXXXXGGGXXPPPP 364
           GGP  PP      G   PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 426 GGPXXPPXXXXXGGGXXPPPP 364
           G P  PP     G G  PPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/64 (23%), Positives = 16/64 (25%)
 Frame = +1

Query: 241 PPPGAXXKXPPXXPKKKXKKCXXPPXXXXXPPXVPXYPXPXXGGGXXTPPPXXXXGXXXR 420
           PPP    +  P            PP            P P  G     PPP        R
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 421 XPGP 432
            P P
Sbjct: 375 QPPP 378



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/61 (26%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
 Frame = +1

Query: 214 PGPXXXKKXPPPGAXXKXPPXXPKKKXKKCXXPPXXXXXPPXVPXYP-XPXXGGGXXTPP 390
           P P       PP      PP  P         PP     PP     P  P        PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477

Query: 391 P 393
           P
Sbjct: 478 P 478


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = +2

Query: 242  PPXGPKXKXPPFXXKKKXKSVXPPPXXXXXPPXCLXIPXXTGGGGXXPPP 391
            PP  P+   PP     +  +  PPP     PP     P   G     PPP
Sbjct: 1690 PPVRPQSAAPP-----QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/53 (26%), Positives = 16/53 (30%)
 Frame = +1

Query: 232 KKXPPPGAXXKXPPXXPKKKXKKCXXPPXXXXXPPXVPXYPXPXXGGGXXTPP 390
           K   PP    +  P   K   K    PP     PP  P    P       +PP
Sbjct: 323 KAQQPPAHLVQSAPVQRKTTPKIQRLPPSSIQIPPPKPMQKFPANAASSESPP 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.152    0.558 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,167
Number of Sequences: 5004
Number of extensions: 16488
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)