Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J01
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    29   0.91 
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   1.2  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    28   1.6  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    27   4.8  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   8.5  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   8.5  

>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 439 HPIFRCYTYSETREEHLQRSLALSSRLWCKACIFLRNPGIGSEVVAHQDATYLYTEP 609
           HP     T   T+  +    +AL+SRL  K  I L  P + S   +  D+ +  T+P
Sbjct: 269 HPWLTSSTPFRTKNGNCADPVALASRLMLKLRIDLDKPRLASSRASQNDSGFSMTQP 325


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 630 PEANWGSWFCVQICCVLMC 574
           P A WG WF V I   L+C
Sbjct: 608 PAAGWGEWFAVSIPVSLLC 626


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +1

Query: 394 PELSLNKVG-HALH-LLHPIFRCYTYSETREEHLQRSLALSSRLWCKACIFLRNPGIGSE 567
           P  SL+    HAL  L++PI+  +   E        S+  S+     +C +L+NP + S 
Sbjct: 72  PSSSLSSESEHALDALVYPIYSHHNILEHENNSDYASITPSNHPAFTSCAYLQNPVVDSN 131

Query: 568 VVAHQDATYLYTEPTPPVGFWIALEEATVQNGCL 669
                ++ +  +   PP  F     E + +  CL
Sbjct: 132 --NEYESKFRLSLEIPPTDFLSTSTELSKRESCL 163


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 430 HLLHPIFRCYTYSETREEHLQRSLALSSRLWCKACIFL 543
           H  HP+F C     +R E+ ++ +++  R   +A  FL
Sbjct: 41  HSYHPMFICLLRDSSRNENRKKKVSIGLRTIMRAFSFL 78


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 541 LRNPGIGSEVVAHQDATYLYTEPTP 615
           L++ GIG  +VA Q A   Y  P P
Sbjct: 352 LKSEGIGEVIVASQQANGFYRSPGP 376


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 642 FKSYPEANWGSWFCVQICCVLMCNHFGTNA 553
           FK + E N  +W  + +  V++ N FG  A
Sbjct: 181 FKFWTEINSAAWISIFLAVVIVINLFGVRA 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,100
Number of Sequences: 5004
Number of extensions: 56930
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)