Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J01
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497...    29   6.7  
11_02_0127 + 8595878-8595952,8596265-8596687,8596980-8597384           28   8.9  
11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364           28   8.9  
11_02_0109 + 8375699-8375776,8376461-8376877,8376980-8377243,837...    28   8.9  
08_02_1243 - 25527523-25527960,25527993-25528604                       28   8.9  

>03_05_0861 -
           28348669-28348711,28349471-28349557,28349640-28349784,
           28350832-28350900,28351147-28351207,28351375-28351493,
           28351659-28351713
          Length = 192

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 837 GNVVHKSSHNKSDXSRHAYTFHV 905
           G+++H+S  N S  SRHA + HV
Sbjct: 144 GDLIHQSFENLSPVSRHALSLHV 166


>11_02_0127 + 8595878-8595952,8596265-8596687,8596980-8597384
          Length = 300

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 861 GSFYVQRCPCNSIHV 817
           GSFY +  PCNS+H+
Sbjct: 140 GSFYTRLFPCNSVHI 154


>11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364
          Length = 349

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 861 GSFYVQRCPCNSIHV 817
           GSFY +  PCNS+H+
Sbjct: 101 GSFYTRLFPCNSVHI 115


>11_02_0109 +
           8375699-8375776,8376461-8376877,8376980-8377243,
           8378402-8378806
          Length = 387

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 861 GSFYVQRCPCNSIHVPFETGMGV 793
           GSFY +  PCNS+H+ F + M +
Sbjct: 139 GSFYTRLFPCNSVHL-FHSSMSL 160


>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 754 RLKPRHCLHLGCGSNVCALL-TCESLETATDSRFELWLLQELSRS 623
           R + R CL LGC +N+ A L T E   TA       W+ Q+ + S
Sbjct: 37  RFRRRICLSLGCTANILASLPTREGWWTAFVLYHGCWMTQQAATS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,977
Number of Sequences: 37544
Number of extensions: 398084
Number of successful extensions: 1020
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)