Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J01
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical ...    67   1e-11
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z82287-5|CAB05315.1|  328|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical
           protein Y105C5B.9 protein.
          Length = 288

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = +1

Query: 322 SNEQXKVFLRKXEPSTPMEILQSKPELSLNKVGHALHLLHPIFRCYTYSETREEHLQRSL 501
           S+++ + F  +       E+   K + +LNK+GH LH L P F   T++ ++ +++ + +
Sbjct: 66  SSDKIRFFFEEGAVDKDGELTVPKDK-ALNKIGHGLHFLDPTFEKMTFN-SKIQNIFKEI 123

Query: 502 ALSSRLWCKACIFLRNPGIGSEVVAHQDATYLYTEPTPPV-GFWIALEEATVQNGCL 669
                   ++    + P IG  V  H D+T+L  +P   + G WIA++EA+V+NGCL
Sbjct: 124 GYQEPGVVQSMYIFKQPKIGGAVTDHVDSTFLRVDPIDHLTGVWIAIDEASVENGCL 180



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +3

Query: 357 GAIDADGNLTV-ETGAFIKQGRS-RTASPTSDFQMLHV**NA*RAFAKKLGFIEPAVVQS 530
           GA+D DG LTV +  A  K G       PT +    +   +  +   K++G+ EP VVQS
Sbjct: 77  GAVDKDGELTVPKDKALNKIGHGLHFLDPTFEKMTFN---SKIQNIFKEIGYQEPGVVQS 133

Query: 531 MYIFKKP 551
           MYIFK+P
Sbjct: 134 MYIFKQP 140



 Score = 36.7 bits (81), Expect = 0.023
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 837 GNVVHKSSHNKSDXSRHAYTFHV 905
           G VVHKS  N S+ SRHAYT HV
Sbjct: 238 GLVVHKSEANTSEKSRHAYTIHV 260



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 782 QSSFTPIPVSKGTCILLHG 838
           QS F  +P+SKG+ IL+HG
Sbjct: 220 QSKFQHVPISKGSLILIHG 238


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 763 VYHRLKPRHCLHLGCGSNVC 704
           V HR K RHC + GCG +VC
Sbjct: 27  VVHRFK-RHCGYNGCGRSVC 45


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical
           protein F58G4.1 protein.
          Length = 1974

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 403 SLNKVGHALHLLHPIF-RCYTYSETREEHLQRSLALSSRLWCKACI 537
           SLNK+ H LH  HP F RC   +E ++  +  +  + ++L C   +
Sbjct: 662 SLNKLMHMLHQTHPHFIRCIIPNELKKAGMIDANLVLNQLTCNGVL 707


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 647 PQFKTAVCGCLEALTGQECTDV 712
           P+FK   C CL  LTG  C+++
Sbjct: 478 PKFKGYDCTCLTGLTGANCSEI 499


>Z82287-5|CAB05315.1|  328|Caenorhabditis elegans Hypothetical
           protein ZK550.5 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 577 HQDATYLYTEPTP-PVGFWIALEEATVQNGCL 669
           HQD  Y    P    V  W A+E+   QNGCL
Sbjct: 158 HQDLIYFPWRPEELTVCAWTAMEKINKQNGCL 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,088,270
Number of Sequences: 27780
Number of extensions: 341951
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)