Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I24
         (933 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    31   1.7  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    29   5.3  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   5.3  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   7.0  
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    29   7.0  
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152...    28   9.2  
01_01_0995 + 7875273-7875495,7876196-7876274,7876422-7876536,787...    28   9.2  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 447 PPPXGXGXXFLGPXPXXPPKTPXP 518
           PPP G    FL P P  PP  P P
Sbjct: 42  PPPQGAPPPFLAPPPPPPPGPPPP 65


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 427 KPPXPPPXPXKKKXXXXGGXXXXXXXKGXPKXPXXPQFS 311
           +PP PPP P        GG       +G P  P   Q S
Sbjct: 7   QPPPPPPPPQHPPPPQAGGGGGGEFYRGPPPQPPMRQLS 45


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
 Frame = +3

Query: 402 GXGGGXGGFXXFKKXPPP---XGXGXXFLGPXPXXPPKTPXPRXLGXGXGFXXPXGGXXX 572
           G GGG GG   +   PPP    G G    G     PP  P     G G G+    GG   
Sbjct: 79  GGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPP--PTGGGGGGGGGWQQGGGGGGA 136

Query: 573 XP 578
            P
Sbjct: 137 YP 138


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = -3

Query: 562 PPXGXXXPXPXPKXRGXGVLGGXXGXGPKXXXPXPXGGGXFLXXXKPPXPPPXP 401
           PP G   P P P            G  P    P P G G       PP PP  P
Sbjct: 278 PPAGPPPPAPPPLPPSHH---HHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHP 328


>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = -3

Query: 829 PEXXQGXGXXGGXXEGGFPGGXXRXF--XKXPXGLP 728
           P    G G  GG   GGFPGG    F     P G+P
Sbjct: 542 PGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGVP 577


>02_05_0962 +
           33114226-33114684,33114806-33114853,33115166-33115286,
           33115760-33116008,33116149-33116302,33116493-33116985,
           33117524-33117596,33118285-33118343
          Length = 551

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 402 GXGGGXGGFXXFKKXPPP 455
           G GGG GGF   +  PPP
Sbjct: 53  GGGGGGGGFLRLRSAPPP 70


>01_01_0995 +
           7875273-7875495,7876196-7876274,7876422-7876536,
           7878507-7878761
          Length = 223

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
 Frame = +3

Query: 402 GXGGGXGGFXXFKKXP--PPXGXGXXFLGPXPXXPPKTPXPRXLGXGXGFXXPXGGXXXX 575
           G GGG G +  F+  P  PP         P    P   P P   G G  +  P GG    
Sbjct: 20  GGGGGGGEYGTFQGPPSYPPPRP------PVVGYPQPAPPPGLYGQGDPYYRPRGGYQGI 73

Query: 576 P 578
           P
Sbjct: 74  P 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,356
Number of Sequences: 37544
Number of extensions: 303067
Number of successful extensions: 1243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)