Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I24
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    40   0.003
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    40   0.003
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    40   0.003
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    31   1.6  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    31   1.6  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   8.3  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    28   8.3  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 37/127 (29%), Positives = 40/127 (31%)
 Frame = -3

Query: 577 GKXXXPPXGXXXPXPXPKXRGXGVLGGXXGXGPKXXXPXPXGGGXFLXXXKPPXPPPXPX 398
           GK   PP G   P P PK  G   L G  G  P    P P  G       +   PPP P 
Sbjct: 227 GKRQAPPAGSPPPPPPPK--GSPPLAGS-GSPP----PPPAAGSP--PPPRTGSPPPPPT 277

Query: 397 KKKXXXXGGXXXXXXXKGXPKXPXXPQFSQKXXFFPXXXXGGXPXXXXXXXXXGPKXPPQ 218
                   G        G P  P  P+ S      P    GG P         G   PP 
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP----PPAGTGSPPPPP 333

Query: 217 RGETPAP 197
           R +  AP
Sbjct: 334 RQKRQAP 340


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 37/127 (29%), Positives = 40/127 (31%)
 Frame = -3

Query: 577 GKXXXPPXGXXXPXPXPKXRGXGVLGGXXGXGPKXXXPXPXGGGXFLXXXKPPXPPPXPX 398
           GK   PP G   P P PK  G   L G  G  P    P P  G       +   PPP P 
Sbjct: 248 GKRQAPPAGSPPPPPPPK--GSPPLAGS-GSPP----PPPAAGSP--PPPRTGSPPPPPT 298

Query: 397 KKKXXXXGGXXXXXXXKGXPKXPXXPQFSQKXXFFPXXXXGGXPXXXXXXXXXGPKXPPQ 218
                   G        G P  P  P+ S      P    GG P         G   PP 
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP----PPAGTGSPPPPP 354

Query: 217 RGETPAP 197
           R +  AP
Sbjct: 355 RQKRQAP 361


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 37/127 (29%), Positives = 40/127 (31%)
 Frame = -3

Query: 577 GKXXXPPXGXXXPXPXPKXRGXGVLGGXXGXGPKXXXPXPXGGGXFLXXXKPPXPPPXPX 398
           GK   PP G   P P PK  G   L G  G  P    P P  G       +   PPP P 
Sbjct: 233 GKRQAPPAGSPPPPPPPK--GSPPLAGS-GSPP----PPPAAGSP--PPPRTGSPPPPPT 283

Query: 397 KKKXXXXGGXXXXXXXKGXPKXPXXPQFSQKXXFFPXXXXGGXPXXXXXXXXXGPKXPPQ 218
                   G        G P  P  P+ S      P    GG P         G   PP 
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP----PPAGTGSPPPPP 339

Query: 217 RGETPAP 197
           R +  AP
Sbjct: 340 RQKRQAP 346


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 459 GXGXXFLGPXPXXPPKTPXPRXLGXGXGFXXPXGG 563
           G G  +       PP  P P  +G G G+  P GG
Sbjct: 51  GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 459 GXGXXFLGPXPXXPPKTPXPRXLGXGXGFXXPXGG 563
           G G  +       PP  P P  +G G G+  P GG
Sbjct: 51  GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
 Frame = +3

Query: 393 FFXGXGGGXGGFXXFKKXPPPXGXGXXFLGPXPXXP---PKTPXPRXLGXGXGFXXPXGG 563
           F    GGG G        PPP G G   L P        P+   P   G G G   P GG
Sbjct: 17  FLLPSGGGGGCGCAPPPPPPPCGCGGPSLPPLQLPRFELPRLSLPSFGGGGCGGPAPCGG 76

Query: 564 XXXXPXXXGXPXXKXFXXRXPKG 632
               P     P    +    P G
Sbjct: 77  --AAPAYVAPPPAAGYAAPPPAG 97


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/53 (28%), Positives = 18/53 (33%)
 Frame = -3

Query: 559 PXGXXXPXPXPKXRGXGVLGGXXGXGPKXXXPXPXGGGXFLXXXKPPXPPPXP 401
           P     P P P  +  G +       P    P P  G   +    PP PPP P
Sbjct: 605 PHAVPPPPPPPPPQSFG-MAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPP 656


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/53 (28%), Positives = 18/53 (33%)
 Frame = -3

Query: 559 PXGXXXPXPXPKXRGXGVLGGXXGXGPKXXXPXPXGGGXFLXXXKPPXPPPXP 401
           P     P P P  +  G +       P    P P  G   +    PP PPP P
Sbjct: 431 PHAVPPPPPPPPPQSFG-MAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPP 482


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 30/125 (24%), Positives = 33/125 (26%), Gaps = 2/125 (1%)
 Frame = +3

Query: 447 PPPXGXGXXFLGPXPXXPPKTPXPRXLGXGXGFXXPXGGXXXXPXXXGXPXXKXFXXRXP 626
           PPP G      G  P  PP+   P+      G   P       P   G P          
Sbjct: 321 PPPQGAPQQGFGAPPQGPPQGGPPQ---GSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGN 377

Query: 627 KGPXPQKGXVXGVFXXXXXXXXXXXKXXXPLXXGGNPXGXXKXXRXF--PPGXPPSXXPP 800
             P PQ G   G F               P   G  P G       +  P G P    PP
Sbjct: 378 FAPPPQSGP-PGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPP 436

Query: 801 XXPXP 815
               P
Sbjct: 437 PPGGP 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,423,556
Number of Sequences: 27780
Number of extensions: 198557
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)