Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I23
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical...   142   2e-34
Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical
           protein Y37D8A.14 protein.
          Length = 174

 Score =  142 bits (345), Expect = 2e-34
 Identities = 60/105 (57%), Positives = 84/105 (80%), Gaps = 2/105 (1%)
 Frame = +1

Query: 226 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFI 405
           ++FDN +  Y NR +IDGWE+RK +++L   D++PDPK+++AAL ACRRVND+ALAVRF+
Sbjct: 42  DKFDNHFINYLNRPEIDGWEVRKALSELHDYDVIPDPKVVEAALRACRRVNDFALAVRFL 101

Query: 406 EACKDKCGNKVNE--IYPYIIQEIKPTLTELGIDTPEELGYDKPE 534
           EA K KCG + N   +Y YI+++++P L ELGIDTPE+LGY +PE
Sbjct: 102 EAIKIKCGAQKNRDTVYAYIVKQVEPVLKELGIDTPEQLGYGEPE 146


>Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 132 RT*CGFQHFRQIFFLYSTNWQGI 64
           RT CG+  F ++FF+ S N +GI
Sbjct: 245 RTICGWSGFERVFFVSSLNGEGI 267


>Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 132 RT*CGFQHFRQIFFLYSTNWQGI 64
           RT CG+  F ++FF+ S N +GI
Sbjct: 245 RTICGWSGFERVFFVSSLNGEGI 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,956,978
Number of Sequences: 27780
Number of extensions: 348139
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)