Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_I19
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0584 - 4326072-4326094,4326306-4326885 30 2.3
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 29 3.1
03_05_0067 - 20460206-20460703,20461255-20461530 29 3.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 7.1
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 28 9.4
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137... 28 9.4
06_03_1381 - 29754405-29754525,29754617-29754671,29755383-297554... 28 9.4
05_06_0281 + 26912419-26913099 28 9.4
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 9.4
01_05_0641 - 23881429-23881836 28 9.4
>02_01_0584 - 4326072-4326094,4326306-4326885
Length = 200
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 766 KXGGGGXXXXKXXGGGGGXXXKRW 695
+ GGGG K GGGGG + W
Sbjct: 93 RDGGGGGGGEKGSGGGGGGLAREW 116
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 714 PPPPPXXFXXXXPPPP 761
PPPPP F PPPP
Sbjct: 67 PPPPPAAFFAAVPPPP 82
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 714 PPPPPXXFXXXXPPPP 761
PPPPP F PPPP
Sbjct: 14 PPPPPQYFQAGPPPPP 29
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 714 PPPPPXXFXXXXPPPP 761
PPPPP + PPPP
Sbjct: 82 PPPPPQMYYQPPPPPP 97
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 674 GGGGGXXPSFXXXPPPXXXXFXXSXPTPPXL 766
GGGGG SF PPP + P PP +
Sbjct: 60 GGGGGGASSFDQPPPP--VSYHRLSPPPPAM 88
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 675 GGGGAXXHLXXXXPPPPPXXFXXXXPPPP 761
GGGGA PPPP + PPPP
Sbjct: 62 GGGGASSF----DQPPPPVSYHRLSPPPP 86
>10_08_0161 +
15312986-15313160,15313250-15313557,15313676-15313754,
15313856-15314373
Length = 359
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 766 KXGGGGXXXXKXXGGGGGXXXK 701
K GGGG K GGGGG K
Sbjct: 241 KDGGGGDKKDKKEGGGGGGDKK 262
>06_03_1381 -
29754405-29754525,29754617-29754671,29755383-29755440,
29755819-29755988,29756576-29756780
Length = 202
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 727 GGGGGXXXKRWXXAPPPP 674
GGGGG R APPPP
Sbjct: 7 GGGGGAGEARGADAPPPP 24
>05_06_0281 + 26912419-26913099
Length = 226
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 727 GGGGGXXXKRWXXAPPPP 674
GG GG + W APPPP
Sbjct: 139 GGVGGLLGRPWPKAPPPP 156
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/89 (25%), Positives = 27/89 (30%)
Frame = -3
Query: 761 GGGWXXXXKXXGXXGGXXXXKMXXRPPPPXXXCFXXXFXXXKXXGPPPGGXXKMXGGXKX 582
GGG G GG R PP + G GG + GG
Sbjct: 22 GGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRGYGGGGGGGGRGYGGGGG 81
Query: 581 XXGVLNFXXXXPGGGGXGXKXXWXXXPGG 495
G + GGGG G + PGG
Sbjct: 82 GGGYESGGGRGYGGGGRGYESGGGRGPGG 110
>01_05_0641 - 23881429-23881836
Length = 135
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 760 GGGGXXXXKXXGGGGGXXXKRWXXA 686
GGGG K GGGGG W A
Sbjct: 38 GGGGGETGKPDGGGGGGGEGLWRRA 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,209,307
Number of Sequences: 37544
Number of extensions: 478098
Number of successful extensions: 2387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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