Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I19
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    32   0.51 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   2.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   2.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   2.7  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    28   8.4  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.4  

>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 675 GGGGAXXHLXXXXPPPPPXXFXXXXPPPP 761
           GGGG         PPPPP       PPPP
Sbjct: 28  GGGGCAPAAPACAPPPPPMCGCAPPPPPP 56



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 675 GGGGAXXHLXXXXPPPPPXXFXXXXPPPP 761
           GGGG          PPPP       PPPP
Sbjct: 27  GGGGGCAPAAPACAPPPPPMCGCAPPPPP 55


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 714 PPPPPXXFXXXXPPPP 761
           PPPPP  F    PPPP
Sbjct: 773 PPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 714 PPPPPXXFXXXXPPPP 761
           PPPPP  F    PPPP
Sbjct: 773 PPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 714 PPPPPXXFXXXXPPPP 761
           PPPPP  F    PPPP
Sbjct: 356 PPPPPGGFKGGPPPPP 371


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 714 PPPPPXXFXXXXPPPP 761
           PPPPP  +    PPPP
Sbjct: 95  PPPPPPHYYTQPPPPP 110


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
 Frame = +1

Query: 430 PXXGPF*KXXVXPRAPXXXXNFPPGXFXXXXFXPXPPPPGXXXKKF--KTPXXFFXPP 597
           P  GPF      PR      N PP  F      P PPPPG    +   + P     PP
Sbjct: 644 PSAGPFSSPQPVPR-----FNGPPSSFILPSIYP-PPPPGVSLNQLPPRVPVPIIRPP 695


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
 Frame = +1

Query: 430 PXXGPF*KXXVXPRAPXXXXNFPPGXFXXXXFXPXPPPPGXXXKKF--KTPXXFFXPP 597
           P  GPF      PR      N PP  F      P PPPPG    +   + P     PP
Sbjct: 644 PSAGPFSSPQPVPR-----FNGPPSSFILPSIYP-PPPPGVSLNQLPPRVPVPIIRPP 695


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
 Frame = +1

Query: 403 PXXMXXWXPPXXGPF*KXXVXPRAPXXXXNFPPGXFXXXXF--XPXPPPPG 549
           P     W PP   P  +    P  P      PP  F        P PPPPG
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
 Frame = +1

Query: 403 PXXMXXWXPPXXGPF*KXXVXPRAPXXXXNFPPGXFXXXXF--XPXPPPPG 549
           P     W PP   P  +    P  P      PP  F        P PPPPG
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,916
Number of Sequences: 27780
Number of extensions: 298326
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)