Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_I17
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 70 5e-13
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 34 0.031
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 32 0.12
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 30 0.38
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 28 2.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 4.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.7
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 4.7
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.7
SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit L2... 27 4.7
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 26 6.1
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 26 8.1
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 26 8.1
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 69.7 bits (163), Expect = 5e-13
Identities = 34/76 (44%), Positives = 47/76 (61%)
Frame = +3
Query: 651 FDRAKMEDLIKRRFFYDQSFAIYGGIYWPV*FWSYGMCT*E*HDPLMEEVFILQEQMLEV 830
FDR + E+L+K+RFF+ SF IYGGI + G + + F+++E MLEV
Sbjct: 10 FDRTQFEELMKKRFFFSPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEV 69
Query: 831 ECSILTPEPVLKASGH 878
+CS+LTP VLK SGH
Sbjct: 70 DCSMLTPHEVLKTSGH 85
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 33.9 bits (74), Expect = 0.031
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +3
Query: 348 NKSQSSXNHLRLSHSQQWGSNKLHRKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDL 527
N +Q+ + L LS +G+ K + +P PF + D +E++ + + A+ KEQ D
Sbjct: 362 NNNQADSDRLNLS----FGTIKEFDFVGVPAPFTKS-QVDSAVEQLKSRI-AHFKEQQDS 415
Query: 528 VRKLKEEKAPEIDIKKAVAELKTR-KKILEDKELSLAPAE 644
V K + EKA + +I+K A+ ++ +K L + ++ ++ E
Sbjct: 416 VTKQRIEKAKQ-EIEKLEAKYNSKEEKTLTEADMVISSEE 454
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 486 LAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKI 608
L + + QG+LVR LK + A + DI K VA+L K +
Sbjct: 5 LVDINERITSQGNLVRSLKSQGASKEDIDKEVAKLLQLKNL 45
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 30.3 bits (65), Expect = 0.38
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Frame = +3
Query: 339 YLVNKSQSSXNHLRLSHSQQWGSNKLHR-KIKIPNPFREIIMADPKI-EEILAPLRANVK 512
Y + LR S W + +R IK + + ++AD EE L+ +
Sbjct: 128 YSKDSEDEQDYELRPRVSSSWNNESYNRLPIKTKDGLLQNVVADVNNGEEFLSESESEAS 187
Query: 513 EQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAPAEDLFD 656
+ D +K+EK ++ +K E+ +++I DKE A+ L +
Sbjct: 188 LEID--SDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLE 233
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 417 HRKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLK 542
HRK+ I + R+II+ D + E + PL+ DL +LK
Sbjct: 626 HRKVVISSTARKIIVLDKERERVELPLQEASAFSEDLRSRLK 667
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 529 TKSPCSFTLALKGARISSILG-SAIMISRK 443
T SPCSFT+ AR+ S+ G S + + R+
Sbjct: 60 TLSPCSFTICSLRARLHSLHGPSTVFLKRE 89
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 688 AFSMTSLLLYMVEFTGQFDFGPMGCALKSNMIHLWKK 798
+ S S+L + + G++ G + CA K+N I +WK+
Sbjct: 1216 SISNWSMLATTLVYLGEYQ-GAVDCARKANSIKVWKQ 1251
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 12/52 (23%)
Frame = +3
Query: 531 RKLKEEK---APEI--DIKKAVAELKTR---KKI----LEDKELSLAPAEDL 650
R KEEK AP I DI +A LK R K + LEDK+L+ PA D+
Sbjct: 977 RDFKEEKIESAPPIINDIDSEIASLKKRIHEKSLVVNALEDKKLAATPANDV 1028
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 477 EEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELS 629
E + AP + N + +P ID+KK ELK +++K+ S
Sbjct: 537 ENVSAPAKFNGSFWSKFIHSSSASPSPSIDMKKESLELKNDTTEIKEKKNS 587
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 450 EIIMADPKIEEILAPLRANVKEQGDLVRKLKEEK 551
E+ A+P+ E +LA + +KEQ + + KE+K
Sbjct: 121 EVACANPEDEALLAERKQRLKEQREKKEQKKEQK 154
>SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit
L25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 570 KKAVAELKTRKKILEDKELSLAPAEDLFDRAKMEDLIKRRFFYDQSFAIY 719
K ++E K R +ILE++ L L+ + + K E + K +F+D +IY
Sbjct: 100 KGKISERK-RDEILENRRLKLSESLKKTSKFKNERVCKLLYFHDFLISIY 148
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Frame = +3
Query: 525 LVRKLKEEK---APEIDIKKAVAELKTRKKILEDKELSLAPAEDL---FDRAKMEDLI 680
+V LK E+ + E DI V+ + +I+ED+++ L ED+ FD++ ++L+
Sbjct: 1 MVTILKPEEFYVSSEADIVNDVSMTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQNLV 58
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 585 ELKTRKKILEDKELSLAPAEDLFDRAKMEDLIKR 686
E KT +L DKE+S+APA+ R E+ +K+
Sbjct: 116 EAKTLDDVL-DKEISIAPAKTEVVRQLEEEAVKK 148
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 770 LSAHPIGPKSNWPVNSTIY--SKRLVIEKAPFN 678
LS + +G ++W IY SKR+V+ PFN
Sbjct: 60 LSINVLGSAASWGAYFCIYDFSKRVVMSMTPFN 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,613
Number of Sequences: 5004
Number of extensions: 56111
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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