Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_I17
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 165 5e-41
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 165 5e-41
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 31 1.1
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 31 1.1
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF408762-1|AAO27841.1| 242|Caenorhabditis elegans unknown prote... 30 2.5
AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical ... 30 2.5
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 29 3.3
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 29 3.3
Z81083-3|CAB03104.1| 559|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 29 5.8
AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical... 29 5.8
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 165 bits (400), Expect = 5e-41
Identities = 89/142 (62%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Frame = +3
Query: 459 MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAP 638
MA P+IE LAPLRA VKE GDL+R LK + AP+IDI KAV ELK RK++LED E++LAP
Sbjct: 1 MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 60
Query: 639 AEDLFDRAKMEDLIKRRFFYDQSFAIYGGIYWPV*FWSYGMCT*E*HDPLME--EVFILQ 812
E FDR K+EDL+KRRFFYDQSFAIYGG+ F G C+ + + L E + FIL+
Sbjct: 61 KEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMG-CSLK-ANMLQEWRKHFILE 118
Query: 813 EQMLEVECSILTPEPVLKASGH 878
E MLEV+C+ LTPEPVLKASGH
Sbjct: 119 EGMLEVDCTSLTPEPVLKASGH 140
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 165 bits (400), Expect = 5e-41
Identities = 89/142 (62%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Frame = +3
Query: 459 MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAP 638
MA P+IE LAPLRA VKE GDL+R LK + AP+IDI KAV ELK RK++LED E++LAP
Sbjct: 65 MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 124
Query: 639 AEDLFDRAKMEDLIKRRFFYDQSFAIYGGIYWPV*FWSYGMCT*E*HDPLME--EVFILQ 812
E FDR K+EDL+KRRFFYDQSFAIYGG+ F G C+ + + L E + FIL+
Sbjct: 125 KEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMG-CSLK-ANMLQEWRKHFILE 182
Query: 813 EQMLEVECSILTPEPVLKASGH 878
E MLEV+C+ LTPEPVLKASGH
Sbjct: 183 EGMLEVDCTSLTPEPVLKASGH 204
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = +3
Query: 507 VKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAPAEDLFDRAKM 668
V QG+ + EEKA + +IKK ++++ ++++ +D EL ++L ++ K+
Sbjct: 399 VARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKRVQELTEQRKV 452
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = +3
Query: 507 VKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAPAEDLFDRAKM 668
V QG+ + EEKA + +IKK ++++ ++++ +D EL ++L ++ K+
Sbjct: 399 VARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKRVQELTEQRKV 452
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/47 (27%), Positives = 31/47 (65%)
Frame = +3
Query: 480 EILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDK 620
++ A L + + Q ++ R++++E ++++ +AE K RK++LED+
Sbjct: 405 QMTAALEESTRRQAEMNRQIEDEARKRDELQR-IAEEKKRKQLLEDQ 450
>AF408762-1|AAO27841.1| 242|Caenorhabditis elegans unknown protein
protein.
Length = 242
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 558 EIDIKKAVAELKTRKKILEDKELSLAPAEDLFD 656
E D+K E + ++I+E+ E+ L PAE+L D
Sbjct: 103 EEDVKLEPMEYENSEQIVENAEIKLEPAEELLD 135
>AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical
protein F59H5.1 protein.
Length = 758
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 558 EIDIKKAVAELKTRKKILEDKELSLAPAEDLFD 656
E D+K E + ++I+E+ E+ L PAE+L D
Sbjct: 619 EEDVKLEPMEYENSEQIVENAEIKLEPAEELLD 651
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 393 QQWGSNKLHR-KIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDI 569
+ WG+ ++K F II+ D +EE A+ E D ++ +++EK + D
Sbjct: 304 ESWGAIGFDLWQVKSGTIFDNIIITD-SVEEA----EAHAAETFDKLKTVEKEKKEKADE 358
Query: 570 KKAVAELKTRKKILEDKE 623
+ AE + RKK E+KE
Sbjct: 359 ETRKAEEEARKKAEEEKE 376
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 393 QQWGSNKLHR-KIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDI 569
+ WG+ ++K F II+ D +EE A+ E D ++ +++EK + D
Sbjct: 304 ESWGAIGFDLWQVKSGTIFDNIIITD-SVEEA----EAHAAETFDKLKTVEKEKKEKADE 358
Query: 570 KKAVAELKTRKKILEDKE 623
+ AE + RKK E+KE
Sbjct: 359 ETRKAEEEARKKAEEEKE 376
>Z81083-3|CAB03104.1| 559|Caenorhabditis elegans Hypothetical
protein F44F1.4 protein.
Length = 559
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 KEQGDLVRKLKE-EKAPEIDIKKAVAELKTRKKILEDKE 623
+E+ V K++E EK + I K++ EL+ KK+LE+K+
Sbjct: 388 EEEQQKVLKIQELEKQKDEQIMKSMLELEDMKKLLEEKD 426
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
F48F5.1 protein.
Length = 1291
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Frame = +3
Query: 408 NKLHRKIKIPNPFREIIMADPKIE--EILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAV 581
N L KIK + R+++ + E E+ A LRA+ +E+ + RK+ E+K E + K+
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRAD-QEKSE-ARKIAEKKKDEQNQKEKE 875
Query: 582 AELKTRKKILEDKELSLAPAEDLFDRAKMEDLIKRRFFYDQ 704
A+L+ ++ E ++++ ++ K +D ++ + DQ
Sbjct: 876 AKLRADQEKSEARKVAEKKKDE--QNQKEKDKLQAKLRADQ 914
>AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical
protein Y46G5A.15 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +3
Query: 471 KIEEI-LAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAE-------LKTRKKILEDKEL 626
++E++ LA LRA + + L+ +EE+ ++++KK E LK L+D E+
Sbjct: 165 ELEDLELAKLRAQIHHEKALMEIEEEERKTKLELKKKSLEFVQKELQLKVEASALKDSEI 224
Query: 627 SLAPAE 644
LA E
Sbjct: 225 KLARME 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,944
Number of Sequences: 27780
Number of extensions: 299930
Number of successful extensions: 962
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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