Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I15
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0044 - 21819193-21819418,21819531-21820759                       31   1.2  
07_03_0633 + 20120560-20123464,20123608-20123672                       29   6.6  
05_05_0054 - 21936875-21937346,21937452-21937927                       29   6.6  

>05_05_0044 - 21819193-21819418,21819531-21820759
          Length = 484

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 626 GPDHFNESIMTESRLVLRDPTPPIGNGEGLSTAEELV 736
           G D ++ES+   S +  + P PP G G G++  E+ +
Sbjct: 292 GDDRWDESLARLSGVAPQQPAPPAGTGAGMAVDEQAI 328


>07_03_0633 + 20120560-20123464,20123608-20123672
          Length = 989

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 160 LISHLYVYER*ILTVCSIHPKRHILALSVTI*LCLKE*RQQVI*LMMKQLPMEWF 324
           +  HL  + R  L  CSI P  ++   ++ I + +    QQ   + MK++  EWF
Sbjct: 400 MCEHLCDHLRKCLCYCSIFPSGYLFEKNMLIHMWIASFMQQHDGIGMKEMEKEWF 454


>05_05_0054 - 21936875-21937346,21937452-21937927
          Length = 315

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 484 RRHVSLPSINITSLQXDDFPHGMPNNSPPRNIKTYRSQGDGA 609
           +R  S+  I   +L  DD  HG P+ SPP ++ T  S    A
Sbjct: 207 KRRSSIHDITTVNLPDDD--HGNPSPSPPPSVLTAHSSSSAA 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,353,178
Number of Sequences: 37544
Number of extensions: 522022
Number of successful extensions: 1158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)