Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_I14
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 156 4e-39
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 156 4e-39
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 156 4e-39
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 116 4e-27
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 2.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 4.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 6.5
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 6.5
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 8.6
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 156 bits (379), Expect = 4e-39
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +2
Query: 344 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 523
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LF
Sbjct: 46 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105
Query: 524 EDTNLCAIHAKRVTIMPKDIQLA 592
EDTNLCAIH KRVTI PKD+QLA
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLA 128
Score = 93.1 bits (221), Expect = 5e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +1
Query: 208 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 342
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 156 bits (379), Expect = 4e-39
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +2
Query: 344 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 523
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LF
Sbjct: 46 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105
Query: 524 EDTNLCAIHAKRVTIMPKDIQLA 592
EDTNLCAIH KRVTI PKD+QLA
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLA 128
Score = 93.1 bits (221), Expect = 5e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +1
Query: 208 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 342
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 156 bits (379), Expect = 4e-39
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +2
Query: 344 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 523
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LF
Sbjct: 46 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105
Query: 524 EDTNLCAIHAKRVTIMPKDIQLA 592
EDTNLCAIH KRVTI PKD+QLA
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLA 128
Score = 93.1 bits (221), Expect = 5e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +1
Query: 208 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 342
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 116 bits (280), Expect = 4e-27
Identities = 60/89 (67%), Positives = 74/89 (83%), Gaps = 6/89 (6%)
Frame = +2
Query: 344 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEASEA 505
T ALREIR+YQ+ST+LLI++LPF R+VREI+ +F TD LR+QS A+ LQEA+EA
Sbjct: 26 TTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEA 85
Query: 506 YLVGLFEDTNLCAIHAKRVTIMPKDIQLA 592
+LV LFEDTNLCAIHAKRVTIM +D+QLA
Sbjct: 86 FLVHLFEDTNLCAIHAKRVTIMQRDMQLA 114
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 323 HIVIALATVALREIRRYQKSTELLIRKLPFQR 418
H+ L A RE+++ ++ EL++ LPFQR
Sbjct: 331 HVWEKLEEEAPREVKQIEQPKELVLNLLPFQR 362
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 577 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 401
LR+ T + + + QA LE S + Q+ SFEIL +TLE
Sbjct: 73 LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132
Query: 400 TDKQLSR 380
++ +SR
Sbjct: 133 SNPNISR 139
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 538 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 362
Q+G F +AN I A + + E + EIL ER L+ K+ +R T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 203 KQWLVLNKQPVNLLEVKLRVNNLLQ 277
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 362 IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYLVGLFE 526
+ +++ S LLI P Q +RE+A DF +F + + A E EAY+ L E
Sbjct: 524 LSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQE 583
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,287
Number of Sequences: 5004
Number of extensions: 47114
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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