Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I13
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.51 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   6.3  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   6.3  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 352 DFHNPEQEHSIRKVFNGRETCTGI*RAIKITRSTQIPPSK 471
           +FH+PE+  ++ +V NG E  TG  R +++    Q+PP++
Sbjct: 279 NFHSPEEAKTVVQVLNGYE-ITG--RRLRVEWKRQLPPAE 315


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 346 PTKPTLQLSQLTPYPKSCISFGSLPAVQI 260
           P++  + +SQ++   K C S+ SLP +Q+
Sbjct: 336 PSQNDISVSQISVDEKICTSYESLPKIQL 364


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 670 NYLGNIPYKSGEPSNRLVCGAGDCSKP 750
           N+ G I  K+ EPS R++C    C KP
Sbjct: 760 NHTGEITRKATEPSIRIICNF--CRKP 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,130
Number of Sequences: 5004
Number of extensions: 68498
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)