Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I12
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681...    29   4.9  
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    29   6.5  
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702...    29   6.5  
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704...    28   8.5  

>10_06_0131 -
           11066033-11066251,11066548-11067012,11067102-11068177,
           11068269-11068422,11068511-11068601,11069016-11069152
          Length = 713

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 365 LIGSTSELPCLFVKGVLNSRIFLI 294
           L+GS  E+ C FV G L SR FL+
Sbjct: 88  LLGSEFEVACSFVDGYLMSRTFLV 111


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 294 FCRFSSRRMFIYKKFVCKISHGTLNLSI 211
           F  + S R  I  KFVCK+ +G L  SI
Sbjct: 65  FANYYSLRFTIISKFVCKVCYGLLCTSI 92


>01_06_1827 +
           40169001-40169263,40169358-40169472,40170090-40170201,
           40170556-40170623,40170798-40170852,40170948-40171027,
           40171811-40171924,40172178-40172296,40173064-40173181,
           40173264-40173394,40173535-40173688,40173922-40174017
          Length = 474

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 772 PVLGFLPCPASWAPRRARRVQPSRLRPAPR 683
           P  G LP PA   P  AR   P+R RP PR
Sbjct: 3   PPAGLLPWPA---PSAARLAAPTRTRPPPR 29


>11_06_0349 +
           22565405-22566279,22567774-22569772,22570360-22570478,
           22570835-22571117
          Length = 1091

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +2

Query: 20  HYRESLXFDTFHSLHSELRIYLIYMLFFYENCEISQ*NRESHLIDTELLFNKYFTKS*RR 199
           H R     ++F +LHS +  + I  +   + C+       SH    + + N Y  K    
Sbjct: 575 HVRSLTVLESFSALHSTMLKFQILQVLDLDGCK-----DLSHPHQLKKICNMYQLKYLGL 629

Query: 200 GKCTIDKFKVP*LILHTNFLYINILREENLQKL-RKYANLKLLSRI 334
            +  ID  K+P  I    +L +  +RE N++KL   +A L+ ++ +
Sbjct: 630 RRTDID--KIPKNIGRLEYLEVLDIRETNVRKLPTSFAKLQRMTHL 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,810,686
Number of Sequences: 37544
Number of extensions: 454618
Number of successful extensions: 1339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)