Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I11
         (910 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59476-1|AAB07067.1|  352|Drosophila melanogaster RNA-binding pr...    29   8.8  
AY061458-1|AAL29006.1|  352|Drosophila melanogaster LD40792p pro...    29   8.8  
AE014296-1235|AAN12056.1|  352|Drosophila melanogaster CG8597-PE...    29   8.8  
AE014296-1234|AAN12055.1|  352|Drosophila melanogaster CG8597-PD...    29   8.8  
AE014296-1233|AAN12054.1|  352|Drosophila melanogaster CG8597-PC...    29   8.8  
AE014296-1232|AAN12053.1|  352|Drosophila melanogaster CG8597-PB...    29   8.8  
AE014296-1231|AAF50578.1|  352|Drosophila melanogaster CG8597-PA...    29   8.8  

>U59476-1|AAB07067.1|  352|Drosophila melanogaster RNA-binding
           protein lark protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 SMRSSYDPMYSRRSPPP 219
           S+   YD M+SRRSPPP
Sbjct: 287 SVSRGYDTMFSRRSPPP 303


>AY061458-1|AAL29006.1|  352|Drosophila melanogaster LD40792p
           protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 SMRSSYDPMYSRRSPPP 219
           S+   YD M+SRRSPPP
Sbjct: 287 SVSRGYDTMFSRRSPPP 303


>AE014296-1235|AAN12056.1|  352|Drosophila melanogaster CG8597-PE,
           isoform E protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 SMRSSYDPMYSRRSPPP 219
           S+   YD M+SRRSPPP
Sbjct: 287 SVSRGYDTMFSRRSPPP 303


>AE014296-1234|AAN12055.1|  352|Drosophila melanogaster CG8597-PD,
           isoform D protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 SMRSSYDPMYSRRSPPP 219
           S+   YD M+SRRSPPP
Sbjct: 287 SVSRGYDTMFSRRSPPP 303


>AE014296-1233|AAN12054.1|  352|Drosophila melanogaster CG8597-PC,
           isoform C protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 SMRSSYDPMYSRRSPPP 219
           S+   YD M+SRRSPPP
Sbjct: 287 SVSRGYDTMFSRRSPPP 303


>AE014296-1232|AAN12053.1|  352|Drosophila melanogaster CG8597-PB,
           isoform B protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 SMRSSYDPMYSRRSPPP 219
           S+   YD M+SRRSPPP
Sbjct: 287 SVSRGYDTMFSRRSPPP 303


>AE014296-1231|AAF50578.1|  352|Drosophila melanogaster CG8597-PA,
           isoform A protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 SMRSSYDPMYSRRSPPP 219
           S+   YD M+SRRSPPP
Sbjct: 287 SVSRGYDTMFSRRSPPP 303


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,231,790
Number of Sequences: 53049
Number of extensions: 344554
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4443987051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)