Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I11
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    32   0.49 
Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    29   6.1  
AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 531 LXYEKTYDIYFNYLHHKCSQLYSFIHKVKTL-SNPFTHLQLSLHYF 397
           L ++ TY  +F+Y++HK   LY + H V  + S+PF      LH F
Sbjct: 139 LAFDFTY-FWFHYINHKVKWLYRWCHSVHHMYSSPFAASAQHLHPF 183


>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 513 YDIYFNYLHHKCSQLYSFIHKVKTLSNPFTHLQLSLHY 400
           +D+YFN +   CS L+S +     L++   +L +S +Y
Sbjct: 271 FDMYFNLILAYCSNLFSALFCANALAHFLINLSMSRNY 308


>AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical
           protein Y52B11A.5 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 216 WGASAAVHRIIGRSHGTHSAPQWR*IRHG 130
           WG  + VH+ +  S  TH  P+W  I HG
Sbjct: 167 WGVQSCVHQFVFPSGSTH--PRWPGIPHG 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,802,973
Number of Sequences: 27780
Number of extensions: 173941
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)